Basic Information

Insect: Timema genevievae
Gene Symbol: -
Assembly: GCA_902155825.1
Location: CABFWO010002107.1:57043-58398[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00059 0.11 14.9 4.8 1 23 35 57 35 57 0.96

2 13 7.4e-06 0.0014 20.9 0.9 1 23 92 114 92 114 0.98

3 13 7e-05 0.013 17.9 3.2 2 23 122 143 121 143 0.96

4 13 0.00045 0.084 15.3 2.1 1 23 146 168 146 168 0.98

5 13 1.4e-05 0.0026 20.1 2.5 1 23 174 196 174 196 0.98

6 13 0.00093 0.17 14.3 5.4 1 23 202 224 202 224 0.97

7 13 0.00017 0.031 16.7 1.0 1 23 230 252 230 252 0.97

8 13 9.4e-05 0.018 17.5 0.2 1 23 258 281 258 281 0.95

9 13 0.00063 0.12 14.9 3.3 1 21 291 311 291 313 0.94

10 13 4.4e-05 0.0083 18.5 0.8 1 23 319 341 319 341 0.95

11 13 5.6e-07 0.0001 24.5 0.4 2 23 348 369 348 369 0.97

12 13 5.6e-07 0.0001 24.5 5.1 1 23 375 397 375 397 0.98

13 13 7.4e-06 0.0014 20.9 0.9 1 23 403 425 403 425 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00059	0.11	14.9	4.8	1	23	35	57	35	57	0.96
2	13	7.4e-06	0.0014	20.9	0.9	1	23	92	114	92	114	0.98
3	13	7e-05	0.013	17.9	3.2	2	23	122	143	121	143	0.96
4	13	0.00045	0.084	15.3	2.1	1	23	146	168	146	168	0.98
5	13	1.4e-05	0.0026	20.1	2.5	1	23	174	196	174	196	0.98
6	13	0.00093	0.17	14.3	5.4	1	23	202	224	202	224	0.97
7	13	0.00017	0.031	16.7	1.0	1	23	230	252	230	252	0.97
8	13	9.4e-05	0.018	17.5	0.2	1	23	258	281	258	281	0.95
9	13	0.00063	0.12	14.9	3.3	1	21	291	311	291	313	0.94
10	13	4.4e-05	0.0083	18.5	0.8	1	23	319	341	319	341	0.95
11	13	5.6e-07	0.0001	24.5	0.4	2	23	348	369	348	369	0.97
12	13	5.6e-07	0.0001	24.5	5.1	1	23	375	397	375	397	0.98
13	13	7.4e-06	0.0014	20.9	0.9	1	23	403	425	403	425	0.98

Sequence Information

Coding Sequence: ATGAAAACAAACCCTCAAGAGGACAAGCGCACATTTTTCAGCCAGGTCTCATCCGAGGGCGGCATTTCGACCTGCCTTACCAGCGGCACAGAAATGGCGACTCACTTCTGCACGATGTGTGGCGTTATGTTCAAATCTGACTCGAAACTTTGCTCCCACATCCAAACTCATTTGGAAGAGCGTTTGCCCGTGTGTGAGGCATACGAAAAAATATTCTCCTCTGCAGACAATTTAAAGTCTCGCATGGAAGACTATTGTAAAGGGGAACAAGTATTTGTGTGTGAactgtgtgaaaatacctttacgtCCAACAAGAATCTCAGTTCGCACATGAAAATTCATCTCGCGGAGCGAGACCCTTGCACTTGCGACAGCTGCGGTAAGACCTTCGTTAACAGGAAGAAGTTGCTTGGGCATATGAAGTCTCACAAGAACCACAAATGTCCAACTTGTGGCAGAGACTTCAACTTGATCAAACGGCTCAGGATCCACATGAAGAGCCACAGCGAGGAGCGGCCATACTCCTGCGACGTCTGCTACAAGAAGTTCAAGCGCTCGTACTACCTCATCGACCACCGCAAGATTCACACGGGGGAGAAACTACACGAGTGTGACGTGTGCGGTTACACGTGTATTCAGAAGGTGCACTTGGTGAACCACAAGAAGAGGCACTTCAACCAGTACAAGTTCGACTGCGACCTCTGCGGTAAGGGGTTCCACACCAACACCGAGCTTCAAGGTCACAAGAACGTCCACCTGGGTGAACGCCCGTACATGTGTGATATATGTGGTAAGGCGTACCCTTCCAAGACTAACATGATGGGGCATAAAAGGGCACAACACCCAGAAACGGCTCAGAACCCTAAAAAATACGAGTGCGACATCTGCCGTAAGACGTTCACTTACAAACGTTCATTACTGCTTCACGCGCGTTGTCACACAGGCGAAAGCAACTTCCTCTGCGACGTGTGCGGGAAGGCGTTGTCGAGCTGCGAGACGCTCAAGGCCCATCGCCGGATCCACACTGGAGAGAAACCCAACGTGTGCAGTGTTTGTGGTAAGGCGTTTGGCAAGTCTAGTTACCTGAAGGTCCACCAGAGGACCCATACCGGGGAACGTCCCCACACCTGTGATCACTGCGGTAAATCTTTCACCCAGCGGTCCACGCTGGTAATACACCAGCGCTACCATACGGGTCAAAGGCCGTACCATTGCGAGATTTGCTCCAAGGGGTTTGTCTCCAAGGCACTGTTGAAAGCACACCAGATGAATCATGACGTCTCTAGTACAAATCTGGTTCTCGTAGGACACCAAGACATTCACACTCACGCAAACATTGACCTtgacaagttttga
Protein Sequence: MKTNPQEDKRTFFSQVSSEGGISTCLTSGTEMATHFCTMCGVMFKSDSKLCSHIQTHLEERLPVCEAYEKIFSSADNLKSRMEDYCKGEQVFVCELCENTFTSNKNLSSHMKIHLAERDPCTCDSCGKTFVNRKKLLGHMKSHKNHKCPTCGRDFNLIKRLRIHMKSHSEERPYSCDVCYKKFKRSYYLIDHRKIHTGEKLHECDVCGYTCIQKVHLVNHKKRHFNQYKFDCDLCGKGFHTNTELQGHKNVHLGERPYMCDICGKAYPSKTNMMGHKRAQHPETAQNPKKYECDICRKTFTYKRSLLLHARCHTGESNFLCDVCGKALSSCETLKAHRRIHTGEKPNVCSVCGKAFGKSSYLKVHQRTHTGERPHTCDHCGKSFTQRSTLVIHQRYHTGQRPYHCEICSKGFVSKALLKAHQMNHDVSSTNLVLVGHQDIHTHANIDLDKF*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01445004;
90% Identity: iTF_01446829;
80% Identity: iTF_01449823;