Basic Information

Insect: Timema genevievae
Gene Symbol: -
Assembly: GCA_902155825.1
Location: CABFWO010006045.1:31610-37349[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 2.9e-05 0.0054 19.1 2.7 1 23 185 208 185 208 0.95

2 11 0.00028 0.052 16.0 1.9 1 23 214 236 214 236 0.97

3 11 1.9e-05 0.0036 19.6 3.4 1 23 242 264 242 264 0.98

4 11 8.2e-05 0.015 17.6 8.7 1 23 270 292 270 292 0.98

5 11 1.5e-07 2.7e-05 26.3 2.3 1 23 298 320 298 320 0.97

6 11 1.7e-07 3.1e-05 26.1 1.2 1 23 326 348 326 348 0.98

7 11 6e-08 1.1e-05 27.5 0.7 1 23 354 376 354 376 0.98

8 11 2.7e-07 5.1e-05 25.4 3.8 1 23 382 404 382 404 0.98

9 11 9.5e-07 0.00018 23.7 0.3 1 23 410 432 410 432 0.98

10 11 0.00016 0.03 16.7 2.6 3 23 440 460 438 460 0.97

11 11 8.7e-07 0.00016 23.8 1.0 1 23 466 488 466 488 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	2.9e-05	0.0054	19.1	2.7	1	23	185	208	185	208	0.95
2	11	0.00028	0.052	16.0	1.9	1	23	214	236	214	236	0.97
3	11	1.9e-05	0.0036	19.6	3.4	1	23	242	264	242	264	0.98
4	11	8.2e-05	0.015	17.6	8.7	1	23	270	292	270	292	0.98
5	11	1.5e-07	2.7e-05	26.3	2.3	1	23	298	320	298	320	0.97
6	11	1.7e-07	3.1e-05	26.1	1.2	1	23	326	348	326	348	0.98
7	11	6e-08	1.1e-05	27.5	0.7	1	23	354	376	354	376	0.98
8	11	2.7e-07	5.1e-05	25.4	3.8	1	23	382	404	382	404	0.98
9	11	9.5e-07	0.00018	23.7	0.3	1	23	410	432	410	432	0.98
10	11	0.00016	0.03	16.7	2.6	3	23	440	460	438	460	0.97
11	11	8.7e-07	0.00016	23.8	1.0	1	23	466	488	466	488	0.97

Sequence Information

Coding Sequence: ATGTTGCAGGAAGATGGAGAAGTTTTGTCTGGTAACAATAATCCTGTTATATTTGATGATTGGAAGTTTTCACCACTCAAAATGGAATCAAAAGATAAACTTGATGAAGAAGCAGGTGTCGAGTACAAAAATACGGAAAATGTTTCAGATGACCACATCATTGGGCACACAGACTCCATCAACCTCATCTGGGGTAACAGGGCGGCAATTAAGGTTTGGATGTCTGAGGGCGGTCCATCAACCTCATCTGGAGTAACAGGGCGGCAGTTAAGGTTTGGATGTCTGAGGGCGGTCACATCAACCTCATCTGGAGTAACAGGGCGGCAGTTAAGTTCATCGTGGGGCGAAGATGAGCCACCTCCTCCTTCCAGGAAATCTACTCGAATAAGAAAAGCTAGAGCAAGAAAggaggaggaagaagaagaagtgaacagtattgaaaatgaaaattacaatGAGGATGAAATTGAAAGTGAAACTGAGAATGAAAGCGAGGAACATAATAGAGTTAGGTCTTCACTCCGTAAAACTACAGGCAAAAAAGAAAAGCAGTATTCATGCGAGTTTTGTGGTAAAACTTTCTCCGCCGCTTTTAACCTGAACCGTCATCGGCACAACATGCATATCAGCGGCAACCCATTCTCGTGCGACCTGTGTGGTAAATCATTCTCTCTCTCGTCAGAACTAGTTTGCCACAAGCGGATTCATACCGGTGAGCGACCCTACACGTGTAACGATTGTGGTCGCAAGTTCATCCGTGCGTCCACATTAAAGTGTCACCAACGCCTGCATACCGGAGAGAAGCCGTATGTGTGCCATATGTGTGGTATGTGCTTCTCCCAATGTTCTCTGCTGATCCACCATCGTCGGCTACACTCTGGCGAGAAACCTTTCTGTTGCAAGGACTGCGGGAAGACCTTCGCACAGTCCTCTAGTCTCAAGGTTCACGAGCGTGTGCATACCGGAGAAAAACCGTTCAGTTGCGAGCTTTGCGGAAAATCATTTTCTCAGTCCGCAAATTTGATGATGCACAAACGCAAGCATACTGGCGAAAAGCCCTTCATCTGCGAGCAGTGCGGCAAGAGGTTTGCACAGGCGGCCAACCTGAACCATCACATCCGCATGCACATGGGGGAAAAGCCGTACTCCTGTGAGGAGTGTGGGAAGCGTTTTACACACTCAGACTCTCTTAAAAAACACAAGTTGACTCATACAGGGGAAAAACCGTACGCCTGCGAGCTCTGCGGCAAAGCGTTCGCTCAGTCGACCTACTTGAACAGCCACAGGCGTGTGCATACACTCGAGAAACCCTACGGTTGTGAGTTGTGCGGAAAGAAGTTTGCAAACTCGTCGAATCTACGTTGCCACCGCCGTTTGCACACCGGCGAGAAACCTTTTGCTTGTGAGCTTTGTGGTAAAGCTTTCTCTCAACACTCCCCCCTGGTGAGACATCGCCGGACTCACACTAGGTGA
Protein Sequence: MLQEDGEVLSGNNNPVIFDDWKFSPLKMESKDKLDEEAGVEYKNTENVSDDHIIGHTDSINLIWGNRAAIKVWMSEGGPSTSSGVTGRQLRFGCLRAVTSTSSGVTGRQLSSSWGEDEPPPPSRKSTRIRKARARKEEEEEEVNSIENENYNEDEIESETENESEEHNRVRSSLRKTTGKKEKQYSCEFCGKTFSAAFNLNRHRHNMHISGNPFSCDLCGKSFSLSSELVCHKRIHTGERPYTCNDCGRKFIRASTLKCHQRLHTGEKPYVCHMCGMCFSQCSLLIHHRRLHSGEKPFCCKDCGKTFAQSSSLKVHERVHTGEKPFSCELCGKSFSQSANLMMHKRKHTGEKPFICEQCGKRFAQAANLNHHIRMHMGEKPYSCEECGKRFTHSDSLKKHKLTHTGEKPYACELCGKAFAQSTYLNSHRRVHTLEKPYGCELCGKKFANSSNLRCHRRLHTGEKPFACELCGKAFSQHSPLVRHRRTHTR*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01446818;
90% Identity: -
80% Identity: -