Tgen052590.1
Basic Information
- Insect
- Timema genevievae
- Gene Symbol
- -
- Assembly
- GCA_902155825.1
- Location
- CABFWO010010100.1:1-10039[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 3.8e-05 0.0071 18.7 2.1 1 23 62 84 62 84 0.98 2 21 5.9e-07 0.00011 24.4 2.9 1 23 90 112 90 112 0.98 3 21 0.00071 0.13 14.7 2.5 1 23 118 140 118 140 0.98 4 21 0.00079 0.15 14.5 0.2 2 23 147 168 146 168 0.96 5 21 0.01 1.9 11.1 3.6 1 23 176 198 176 198 0.98 6 21 0.0013 0.24 13.9 6.3 1 23 208 230 208 230 0.97 7 21 0.003 0.56 12.7 0.3 2 23 237 258 236 258 0.97 8 21 3.7e-05 0.007 18.7 0.3 1 23 264 286 264 286 0.98 9 21 2.9e-05 0.0055 19.1 0.8 1 21 292 312 292 313 0.96 10 21 0.00015 0.028 16.8 3.2 1 23 392 414 392 414 0.99 11 21 8.7e-05 0.016 17.6 2.3 1 23 420 443 420 443 0.97 12 21 0.45 84 5.9 5.1 2 21 450 469 449 471 0.91 13 21 1.9e-05 0.0036 19.6 0.8 1 23 477 500 477 500 0.98 14 21 4.4e-05 0.0082 18.5 1.8 1 23 505 527 505 527 0.99 15 21 0.007 1.3 11.6 1.9 1 23 537 559 537 559 0.97 16 21 0.0002 0.037 16.4 1.3 1 23 565 587 565 587 0.98 17 21 8.5e-07 0.00016 23.9 0.7 2 23 594 615 593 615 0.97 18 21 5e-05 0.0093 18.3 4.7 1 23 621 643 621 643 0.98 19 21 0.58 1.1e+02 5.5 0.1 1 13 649 661 649 663 0.90 20 21 0.001 0.19 14.2 4.2 1 21 729 749 729 751 0.94 21 21 0.0002 0.038 16.4 2.7 1 23 761 783 761 783 0.98
Sequence Information
- Coding Sequence
- NNGTTGTCACATTCTTACACGAGTATCAACAAAAGAAACACAAAGGCTGTCAAACAAGAGAaacagaaaaagaaaattaaaaaatatgggaTACTGGCGAAAATTCTGCAACTGAAAGACGAGCACACAACAGCAAATTCCTTTTACGACTCCAGCTCTAAATACGTCTTTCCAACCGACGGTTTCCGCTGTGACATTTGTGAGAAATGCTATGCAAGAGAGGGGCAACTAAACAAGCACAAGGTCACACACAGCGAGTTCCGCCCTTTCCACTGCTCCATTTGCCCCAAAACATTCAAACGCAAGTATGAACTCAACACGCACATACAGATCCACAACAAGGAAGGCAGGTATTCGTGTGATGTGTGCAAGTACTCGACGATGAAGAAATCTAATCTGACTCTTCACAGACAACGACACTTCAATCAGTATAATATCAAGTGCGAGGTTTGCGGGAAAGGTTATTACACCAATTATGAAATGAAGCTTCATAAAGCTGTCCACATTCACGGAGAAACAAAACCGTATGTTTGTGACGTGTGTGATAAACAATTCTACTGCGAGTACAACCTAAATCTGCACAAGAAAAGACACAGCTCCGACCAGCAATCAAAGGAGAAATTCACATGCGAGCACTGTGGGAAAAAGTTGCATTCGCGCTCTGAACTAACGAGGCATTCCAAATATCACTCGGGTAACTTTCAGGTGGTGTGCGACATCTGCGGCAAGTGCCTCTCCGGGACAAACGTGCTGCAAGTCCACCGCAGGATTCACACAGGCGAGAAGCCTTTTGTTTGCGATACTTGCGGGAAAGCGTTCAGTGCCTTGAGCTACCTCGTGCTCCACAAACGTTCGCACACGGGAGAGAAGCCGTTCCCTTGCGGGAAGTGTGGGAAATGTTTCGCCCAGCGTTCAAGCCGCACCATTCACATGAGggCGGCAACTATATTGAATACTACCCCTGAAGGAGTTACAGGGGGTGGCAACATTTGGTGGGTGATTATGCCCAACTCGCAGGTCCACAACCATGAACACACAGAAGTTTCCTCagtaaaaaatgaaaagagTGAATTTGTTCTAGACAATCACACAGACTTGACTGAACGAAAACGCCCAGCCCATAATATTTCTCATGAAAAATCTAGAACTAAAAAACTACTCCATTCGGGTGAATTCAAGTGCCCGATATGCGGGAAAGTTTGTGAAGCGAAACATCGCTTAAAGTATCACATAATGACCCACGACGAGTCTCGTCCGTACAAATGTGATGTGTGTGACAAACCTTTCAAAAACATGTGGCACGTGAAGAAACACAAGAATATAACTCACTTGGGAGTAAAAAACTGTGTATGCAAAGTTTGCGGCTATGCCTCATTTTATCGATCGCAGTTAAAGCAACACGAAAAATGTCACGGTGGTACATTCAAGTACAAATGCGAACTTTGTGAGAAATCTTTCCCGGATAAGACAGGGTTCCAAGCACATCGAATAACTTTCCACGGTGAAGAGCCTTATAAATGTGCCGAATGCGGCAAAACATACTCCAAGAAACGGACTTTGGACGATCATACAAAGTCTCACATTCCTGGTTATAAGCCTGTCATGAAGCATCAGTGTGAACTCTGTGGGAAGACATTTCTAAGAATAAACGAACTTTATGTCCACAATCGGCGGCACAGTGTGGATAAAACTCACACCTGTCTATTGTGTGATAAACGGCTGGCGTCACCCCAGTCATTGAAGTACCACATGCGGATCCATACAGGAGAAAAGCCACTAGTTTGCGATACGTGCGGGAAATCTTTCAGAACCTCCCAACTTCTCAGGGTTCACCGGAGGGTACACACCGGGGAAAAGCCGTATTCTTGCGACCTCTGTTCCAAGTCCTTCTCGCAGTGCTCCACTTTGACTGTCCATAAACGTTACCACACGGGGCAGAGACCTTATATTTGTCAGGTTTGCAACCTTAGCTTTGTCACAAGGACtttGGGTCAGAATACAGCGTGTATAGAAAATGGAGGGCTTGGTCACATGAACGCCAAAGGACAGTCGATAGTTTTAAATTGTGCCGAGCAACTCGGCTCAGAGACACAGCCGAATGTGATAGATTGTGCCAAAATAAAACTTGGAGTGAGTAAAAATGACTCGATGTCACACTTGATTACCTTTCACGGTGCGGAGCCATTTACCTGCACCACCTGCGGTAAAACCTACACCAAAGACTCCAGTTTACGGGCGCACACAAAGTGTCATACACCGGGTTACACCCACGAGAAGAAGTTTCAGTGCGACTGCTGCGGCAAAACTTTCCGGACCAAGATGCAGTTGGTGGTTCACGGGAGGAGCCACACCGGGGAAAGGAACTTTCCTTGTGAAAAGTGN
- Protein Sequence
- XLSHSYTSINKRNTKAVKQEKQKKKIKKYGILAKILQLKDEHTTANSFYDSSSKYVFPTDGFRCDICEKCYAREGQLNKHKVTHSEFRPFHCSICPKTFKRKYELNTHIQIHNKEGRYSCDVCKYSTMKKSNLTLHRQRHFNQYNIKCEVCGKGYYTNYEMKLHKAVHIHGETKPYVCDVCDKQFYCEYNLNLHKKRHSSDQQSKEKFTCEHCGKKLHSRSELTRHSKYHSGNFQVVCDICGKCLSGTNVLQVHRRIHTGEKPFVCDTCGKAFSALSYLVLHKRSHTGEKPFPCGKCGKCFAQRSSRTIHMRAATILNTTPEGVTGGGNIWWVIMPNSQVHNHEHTEVSSVKNEKSEFVLDNHTDLTERKRPAHNISHEKSRTKKLLHSGEFKCPICGKVCEAKHRLKYHIMTHDESRPYKCDVCDKPFKNMWHVKKHKNITHLGVKNCVCKVCGYASFYRSQLKQHEKCHGGTFKYKCELCEKSFPDKTGFQAHRITFHGEEPYKCAECGKTYSKKRTLDDHTKSHIPGYKPVMKHQCELCGKTFLRINELYVHNRRHSVDKTHTCLLCDKRLASPQSLKYHMRIHTGEKPLVCDTCGKSFRTSQLLRVHRRVHTGEKPYSCDLCSKSFSQCSTLTVHKRYHTGQRPYICQVCNLSFVTRTLGQNTACIENGGLGHMNAKGQSIVLNCAEQLGSETQPNVIDCAKIKLGVSKNDSMSHLITFHGAEPFTCTTCGKTYTKDSSLRAHTKCHTPGYTHEKKFQCDCCGKTFRTKMQLVVHGRSHTGERNFPCEKX
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -