Basic Information

Insect: Timema genevievae
Gene Symbol: -
Assembly: GCA_902155825.1
Location: CABFWO010003210.1:33437-44983[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 37 0.18 34 7.1 2.6 2 23 45 66 44 67 0.88

2 37 0.00013 0.025 17.0 1.1 3 23 74 94 73 94 0.95

3 37 0.00063 0.12 14.8 2.9 1 23 100 122 100 122 0.98

4 37 0.00022 0.042 16.3 4.2 3 23 141 162 139 162 0.95

5 37 1.9e-05 0.0035 19.6 1.9 2 23 172 193 172 193 0.96

6 37 1.5e-05 0.0028 20.0 0.1 1 23 200 222 200 222 0.99

7 37 8.2e-07 0.00015 23.9 1.2 1 23 228 250 228 250 0.98

8 37 1.4e-05 0.0025 20.1 3.0 1 23 256 278 256 279 0.96

9 37 0.0009 0.17 14.4 2.0 1 23 311 333 311 333 0.95

10 37 0.083 16 8.2 9.5 3 23 341 361 339 362 0.93

11 37 1.8e-05 0.0033 19.7 2.2 2 23 371 392 370 392 0.96

12 37 9.4e-06 0.0018 20.6 0.1 1 23 399 421 399 421 0.97

13 37 3.6e-08 6.7e-06 28.2 0.7 1 23 427 449 427 449 0.98

14 37 0.023 4.3 9.9 0.9 1 14 455 468 455 471 0.86

15 37 9.6 1.8e+03 1.7 0.1 10 23 472 485 470 485 0.93

16 37 0.00024 0.045 16.2 1.1 1 23 491 513 491 513 0.95

17 37 0.0008 0.15 14.5 0.9 2 23 523 544 522 544 0.96

18 37 1.7e-05 0.0032 19.8 0.1 1 23 551 573 551 573 0.98

19 37 7.8e-06 0.0014 20.9 0.4 3 23 581 601 579 601 0.98

20 37 0.027 5.1 9.7 5.8 1 23 617 639 617 639 0.98

21 37 0.0079 1.5 11.4 7.0 2 23 646 667 645 668 0.94

22 37 0.15 29 7.3 5.5 1 23 673 695 673 695 0.98

23 37 0.0051 0.95 12.0 6.1 1 23 705 727 705 727 0.98

24 37 0.00017 0.031 16.7 0.7 1 23 732 754 732 754 0.98

25 37 9.8e-07 0.00018 23.7 0.6 2 23 761 782 760 782 0.97

26 37 9.7e-05 0.018 17.4 3.3 1 23 788 810 788 810 0.98

27 37 2.7 5e+02 3.4 0.2 1 10 816 825 816 826 0.92

28 37 8.5e-05 0.016 17.6 0.0 1 23 907 929 907 929 0.98

29 37 1.1e-05 0.002 20.4 1.6 1 23 935 957 935 957 0.96

30 37 0.034 6.4 9.4 2.9 1 23 963 986 963 986 0.93

31 37 0.0013 0.24 13.9 4.9 1 23 992 1014 992 1014 0.97

32 37 0.00011 0.02 17.3 2.4 1 23 1020 1042 1020 1042 0.98

33 37 0.12 23 7.6 1.4 1 23 1052 1074 1052 1074 0.98

34 37 0.0012 0.22 14.0 0.5 3 23 1080 1100 1079 1100 0.97

35 37 5.9e-06 0.0011 21.2 1.2 2 23 1107 1128 1106 1128 0.96

36 37 1.3e-05 0.0025 20.1 4.3 1 23 1134 1156 1134 1156 0.98

37 37 1.8e-05 0.0034 19.7 0.2 3 23 1164 1184 1162 1184 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	37	0.18	34	7.1	2.6	2	23	45	66	44	67	0.88
2	37	0.00013	0.025	17.0	1.1	3	23	74	94	73	94	0.95
3	37	0.00063	0.12	14.8	2.9	1	23	100	122	100	122	0.98
4	37	0.00022	0.042	16.3	4.2	3	23	141	162	139	162	0.95
5	37	1.9e-05	0.0035	19.6	1.9	2	23	172	193	172	193	0.96
6	37	1.5e-05	0.0028	20.0	0.1	1	23	200	222	200	222	0.99
7	37	8.2e-07	0.00015	23.9	1.2	1	23	228	250	228	250	0.98
8	37	1.4e-05	0.0025	20.1	3.0	1	23	256	278	256	279	0.96
9	37	0.0009	0.17	14.4	2.0	1	23	311	333	311	333	0.95
10	37	0.083	16	8.2	9.5	3	23	341	361	339	362	0.93
11	37	1.8e-05	0.0033	19.7	2.2	2	23	371	392	370	392	0.96
12	37	9.4e-06	0.0018	20.6	0.1	1	23	399	421	399	421	0.97
13	37	3.6e-08	6.7e-06	28.2	0.7	1	23	427	449	427	449	0.98
14	37	0.023	4.3	9.9	0.9	1	14	455	468	455	471	0.86
15	37	9.6	1.8e+03	1.7	0.1	10	23	472	485	470	485	0.93
16	37	0.00024	0.045	16.2	1.1	1	23	491	513	491	513	0.95
17	37	0.0008	0.15	14.5	0.9	2	23	523	544	522	544	0.96
18	37	1.7e-05	0.0032	19.8	0.1	1	23	551	573	551	573	0.98
19	37	7.8e-06	0.0014	20.9	0.4	3	23	581	601	579	601	0.98
20	37	0.027	5.1	9.7	5.8	1	23	617	639	617	639	0.98
21	37	0.0079	1.5	11.4	7.0	2	23	646	667	645	668	0.94
22	37	0.15	29	7.3	5.5	1	23	673	695	673	695	0.98
23	37	0.0051	0.95	12.0	6.1	1	23	705	727	705	727	0.98
24	37	0.00017	0.031	16.7	0.7	1	23	732	754	732	754	0.98
25	37	9.8e-07	0.00018	23.7	0.6	2	23	761	782	760	782	0.97
26	37	9.7e-05	0.018	17.4	3.3	1	23	788	810	788	810	0.98
27	37	2.7	5e+02	3.4	0.2	1	10	816	825	816	826	0.92
28	37	8.5e-05	0.016	17.6	0.0	1	23	907	929	907	929	0.98
29	37	1.1e-05	0.002	20.4	1.6	1	23	935	957	935	957	0.96
30	37	0.034	6.4	9.4	2.9	1	23	963	986	963	986	0.93
31	37	0.0013	0.24	13.9	4.9	1	23	992	1014	992	1014	0.97
32	37	0.00011	0.02	17.3	2.4	1	23	1020	1042	1020	1042	0.98
33	37	0.12	23	7.6	1.4	1	23	1052	1074	1052	1074	0.98
34	37	0.0012	0.22	14.0	0.5	3	23	1080	1100	1079	1100	0.97
35	37	5.9e-06	0.0011	21.2	1.2	2	23	1107	1128	1106	1128	0.96
36	37	1.3e-05	0.0025	20.1	4.3	1	23	1134	1156	1134	1156	0.98
37	37	1.8e-05	0.0034	19.7	0.2	3	23	1164	1184	1162	1184	0.98

Sequence Information

Coding Sequence: ATGCACGACAAAAATAATCCTAGTTCACGCAAAACAAAAGGTAGAAGAACCATTAAGGCTTCAGCTAAAGTGAAAAGTCGAAAGAGCGCCAATGCAAAGAGGCCGAAAAAGAAACTCAATCCCGGAAGGTTTGATTGTGTACCGTGCAACAAGAGCTACTCCTTGAAGAGGACATTAGATCGACACAAGAGGGAACATCACGAGGAGAGAGTGAACGCATGCAACACATGTGGCAAGAGGTTCAAGACCAGACAGACGCTCAAGTACCACTTAGCAGGGCATGTCGCCGAGTTCAAGTATTCCTGTCACCTGTGCAATTACGTCACCAACAGGAATAACTATCTGACGGTGCACATCAAGAACCATGACAGGTTCCCCATTAAATTGCCGCAAGACGCGAGTAAGATGGATTCTCATTTGTGCGAGACCTGCGGCAAGTCCTTCCCGACCAAGCACGGTGTCAAGAGGCACATGTTCACGACACACAACGCGGACTACCGGCCACCGCCCGCGACATGTGACATCTGCCAGAAGGAGTTCACCTATAAGAAGACGCTCAAGAGACACATGGCGCAACACACAGGCATCCTTCCTGAGTACGTGTGCGATATGTGTGGCAAGGTTGTGAGGTCGGGAGAGTCGCTCAAGGCCCACCGGAGAACGCACACTGGCGAGAAACCGTTTTCTTGCAAAATGTGCGGTAAGGCGTTCACCAGCAGCCAGTATGTGACTGTGCACATGCGCACACATACGGGTGAACGTCCCTATATTTGCCAAGTGTGTGGGAAGAGCTTCACTCAGAGACCATGTCTTGTCGGTCACATGAAGACCCACCATTCACAGAAGACTCTGACATTGGCTTGCAATTTTGTCACCCATAAGAAGAGCTACATATATAGACACTGCAAGAATCACGCCAATAACTTCACCCACTTCTGTGACGTCTGTCAGAAAGGTTTCCGTAACAATACCTCGTTGTTACAACATAAAATAGTCCATACGGGACTGAAACCTCACCTGTGCGATATTTGTGCCAAATCGTTCACTACGAAGCATTGCTTGAAACTTCACAAGATAAGGCACCACTCTGACTACCAACCGAAATTGGTCGAGTGTGGAGTCTGCCATCGCGTGTTCAAGCGCAGGTACAGTTTGAAGCAACACATGTCCCAGCACACAGGGGACGCATCCAAGTTTGTCTGCGACGTCTGCGGTAAGGTTGTGTCCACAGCGTCTTATCTCCGTGTCCACAAGAGGGCACATTCTGGAGAGAAGCCCTTTGTATGCAATGTTTGTGACAAGGCGTTCAGTGACAGTAAATATTTGCGTGTCCATATGCGCACCCACACAGGCGAGCGCCCGTACATGTGTAACCTCTGCGGTAAAACGTTCACCCAAGGGTCTTGTCTGGGTTTCCGCAACAAGGCTTCATTACTGGAACACAAGCTCGTCCACACGGGACTGAAACCGTATCTCTGCGATAACTGTGGTGAGTCGTTCACCACCAACCAGCGGTTGAAAGTGCACAAGCTGAGGCACGATGCCGACCACCGGCCAGAGTTGATCCAGTGCGGCGTTTGTCAGCGGTTGTTCACGTTCAGGAACAGTTTGAAGCGCCACATGGCCCAGCATACGGGCAACATGCCCAAGTTTGTCTGTGAGGTCTGCGGTAAGGTGCTGACATCCAGACCGTCCCTCAGGGTACACGAGAGGACACACAGCGGGGAAAAGCCCTTTGGTTGTAAAGTTTGTGGCAAAGCGTTTGGTGGCAAGACCTACTTGCGTGTCCATATGCGCACCCACACGGGTGAACGCCCCTACTCGTGTGATCTCTGTGGTGAAAATAAGTTCAAGTGTGACATGTGTGACTCTACGTTTAGTCGCCAGTCTTATTGCAAACTTCACAGAATGAGGCACTTGAAAGCTTTCACGCTCCATTGCAAACATTGCGGAAAAGGATTTCACACTCGCACAGAGCTACAAGGTCATGTAAATGTCCACCACGGCGGAAACAAGTTTGTTTGCCATGTTTGCAAGCGGGTGTATCCGCATAGATATGTACTAGAGTGTCATTTAAGGATGCACGAGCCAGGTTATGAACTCAAGAAAAGGCACCAGTGTGAGACCTGCGGTAAAACATTCGCGTGCAAAAGTTCACTTAATTCACATAGCAAGCGTCACGCCGGCCATACGTTTGTCTGCGACGTGTGCGGAAAGTGCATGACTAGTCGCTGGTCACTGGTGACTCACTTGAGGATTCACTCTGGTGAAAAACCCTTGGTATGCGATGTTTGTGGGAAGTCGTTCACAAAGAGCACTGGTCTAAAAGTTCACAGACGAACACACACTGGAGAGAGGCCGTACAGCTGCGACCTGTGCGGGAAATCGTTCACCCAGTGCTCGACGATGGTCATTCACAAGCGGTACCATTCGGGGCTCAGGCCTTTTGAGTGTGCGGAATGTGGCAGGTCATACATACTAGGTAATATTTCTTTGAGAAATCAGAAGCGGGGCACAGACCTTTCCCTGTTATTTATAAAGAACTCTTCATCGCCAGTCGAGGGCAGGCCACTGCTGGCGAAAACTCGTTCAGGTACTGGTTCGGAAACAACTCTTCCTGAAGGTGATGGGTCGTCGAATAACTCGCTCGACTCTATGAATTCAAATGACGTGTACAAGCTCAAAACACACATGGAGATTCATAGAGCAGAGAAGAGATATGTGTGTACCGTGTGTGGAGTTGCGTTTGTCTTGAAGGCGTACTTGAATTCTCACATGCTTATCCACAGCGACGACCGTCCCCACGCCTGTGAGGTGTGCGGCAAGCAGTTTAAACGTAAACAGCAGCTGAAACTCCATTTACTGATACACAAGAACGAAAGGAACCATGTTTGTGACATTTGTGGGTCTGCCTTCATCCAGAGGACTCAGTTGATTTATCACTGCAGAAGGAAACACACAAAGGAAACTACATTTCATTGCGACGTCTGTGGCAAGGGTTTCTACAACCGCAATCATTTCACAGATCACACTAATTTACACACCGGTTATTTCCCCTACAAATGTGAAGTGTGCGGCAAGTCTTACAAGGTGTACTCGAGTTTTCGGTATCACAAGGAAACCCACGTGACAAAGTCTGAGTCTGGGGAGATGTTCAAGTGCGAAACTTGTCTTGAGATATTCTCTACGAAACTCATTCTGACGTTACATAAGAGGAGACATGCGCCCAAGCGGGCGTGCCGACTGTGCAACAAGCAACTGTCAAGTTCCGAGTCGCTCAAAGTCCACCTTCGCATACACGCCGGCGAGAAGCCTTGTATCTGCGATGTTTGCGGAAAGAGGTTTGTGTCGCGGCCGCTTCTGAGGATCCACCAGAGAACACACACCGGGGTGAAACCGTACTCTTGTAACGTCTGCGGGAAGATGTTCACACAGCGCTGCACGCTGACGGTGCATAGAAGATATCATACCGGCGAAACTCCGTATGGCTGCCAAGTCTGCCCAAAGGCTTTTGTCTCAAAGAACTTGCTTAAGGCACATTTAAAGACTCATGAAAAACAAATGTCAATCGGATGCTGTGCAGTGGCAGGgcagttgtattaa
Protein Sequence: MHDKNNPSSRKTKGRRTIKASAKVKSRKSANAKRPKKKLNPGRFDCVPCNKSYSLKRTLDRHKREHHEERVNACNTCGKRFKTRQTLKYHLAGHVAEFKYSCHLCNYVTNRNNYLTVHIKNHDRFPIKLPQDASKMDSHLCETCGKSFPTKHGVKRHMFTTHNADYRPPPATCDICQKEFTYKKTLKRHMAQHTGILPEYVCDMCGKVVRSGESLKAHRRTHTGEKPFSCKMCGKAFTSSQYVTVHMRTHTGERPYICQVCGKSFTQRPCLVGHMKTHHSQKTLTLACNFVTHKKSYIYRHCKNHANNFTHFCDVCQKGFRNNTSLLQHKIVHTGLKPHLCDICAKSFTTKHCLKLHKIRHHSDYQPKLVECGVCHRVFKRRYSLKQHMSQHTGDASKFVCDVCGKVVSTASYLRVHKRAHSGEKPFVCNVCDKAFSDSKYLRVHMRTHTGERPYMCNLCGKTFTQGSCLGFRNKASLLEHKLVHTGLKPYLCDNCGESFTTNQRLKVHKLRHDADHRPELIQCGVCQRLFTFRNSLKRHMAQHTGNMPKFVCEVCGKVLTSRPSLRVHERTHSGEKPFGCKVCGKAFGGKTYLRVHMRTHTGERPYSCDLCGENKFKCDMCDSTFSRQSYCKLHRMRHLKAFTLHCKHCGKGFHTRTELQGHVNVHHGGNKFVCHVCKRVYPHRYVLECHLRMHEPGYELKKRHQCETCGKTFACKSSLNSHSKRHAGHTFVCDVCGKCMTSRWSLVTHLRIHSGEKPLVCDVCGKSFTKSTGLKVHRRTHTGERPYSCDLCGKSFTQCSTMVIHKRYHSGLRPFECAECGRSYILGNISLRNQKRGTDLSLLFIKNSSSPVEGRPLLAKTRSGTGSETTLPEGDGSSNNSLDSMNSNDVYKLKTHMEIHRAEKRYVCTVCGVAFVLKAYLNSHMLIHSDDRPHACEVCGKQFKRKQQLKLHLLIHKNERNHVCDICGSAFIQRTQLIYHCRRKHTKETTFHCDVCGKGFYNRNHFTDHTNLHTGYFPYKCEVCGKSYKVYSSFRYHKETHVTKSESGEMFKCETCLEIFSTKLILTLHKRRHAPKRACRLCNKQLSSSESLKVHLRIHAGEKPCICDVCGKRFVSRPLLRIHQRTHTGVKPYSCNVCGKMFTQRCTLTVHRRYHTGETPYGCQVCPKAFVSKNLLKAHLKTHEKQMSIGCCAVAGQLY*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -