Tgen033476.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Timema genevievae
Gene Symbol
-
Assembly
GCA_902155825.1
Location
CABFWO010003210.1:75904-92131[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 48 0.0011 0.2 14.2 1.4 2 23 11 32 10 32 0.97
2 48 0.15 29 7.4 4.1 1 23 38 60 38 60 0.98
3 48 0.091 17 8.1 1.7 2 23 67 88 67 88 0.97
4 48 0.00049 0.091 15.2 3.3 1 23 94 116 94 116 0.98
5 48 0.052 9.7 8.8 4.7 1 23 127 149 127 149 0.96
6 48 0.00085 0.16 14.4 0.1 2 23 156 177 155 177 0.97
7 48 5.1e-07 9.5e-05 24.6 0.8 1 23 183 205 183 205 0.98
8 48 5.8e-05 0.011 18.1 4.5 1 23 211 233 211 233 0.98
9 48 9.2e-07 0.00017 23.8 1.8 1 23 239 261 239 261 0.99
10 48 4.2e-05 0.0078 18.6 0.5 2 23 307 328 306 328 0.97
11 48 0.00084 0.16 14.5 4.9 1 23 333 355 333 355 0.97
12 48 1.6 2.9e+02 4.2 5.2 1 23 361 383 361 383 0.98
13 48 0.047 8.9 8.9 1.5 2 23 390 411 389 411 0.97
14 48 0.00029 0.054 15.9 4.5 1 23 417 439 417 439 0.98
15 48 0.71 1.3e+02 5.2 6.4 1 23 450 472 450 472 0.97
16 48 0.00098 0.18 14.2 0.1 1 23 478 500 478 500 0.98
17 48 1.7e-06 0.00031 23.0 0.3 1 23 506 528 506 528 0.98
18 48 5.3e-07 9.9e-05 24.5 0.5 1 23 534 556 534 556 0.98
19 48 0.00042 0.079 15.4 4.5 2 20 609 627 608 630 0.94
20 48 0.015 2.8 10.5 2.7 1 23 636 658 636 658 0.98
21 48 0.071 13 8.4 3.5 1 23 664 686 664 686 0.99
22 48 0.0011 0.21 14.0 0.8 2 23 693 714 692 714 0.96
23 48 0.00059 0.11 15.0 1.4 1 23 720 742 720 742 0.96
24 48 0.21 39 6.9 6.6 1 23 753 775 753 775 0.96
25 48 0.00044 0.082 15.4 0.0 1 23 781 803 781 803 0.98
26 48 2.2e-05 0.0041 19.4 0.1 1 23 809 831 809 831 0.97
27 48 1.5e-06 0.00029 23.1 2.3 3 23 839 859 837 859 0.97
28 48 2.1e-06 0.00039 22.7 1.1 2 23 911 932 910 932 0.96
29 48 0.00013 0.024 17.0 3.3 1 23 938 960 938 960 0.95
30 48 0.00022 0.041 16.3 3.9 1 23 966 988 966 988 0.98
31 48 0.72 1.3e+02 5.2 7.7 1 23 994 1016 994 1016 0.96
32 48 0.0069 1.3 11.6 0.2 3 23 1023 1044 1022 1044 0.95
33 48 0.00019 0.036 16.5 4.3 1 23 1055 1077 1055 1077 0.98
34 48 0.0033 0.62 12.6 0.3 1 23 1083 1105 1083 1105 0.96
35 48 1.3e-06 0.00024 23.3 0.1 1 23 1111 1133 1111 1133 0.99
36 48 1.9e-06 0.00036 22.8 3.1 3 23 1141 1161 1140 1161 0.99
37 48 7.5 1.4e+03 2.0 0.3 1 10 1167 1176 1167 1178 0.87
38 48 7.5e-07 0.00014 24.1 0.9 2 23 1242 1263 1241 1263 0.96
39 48 0.00035 0.066 15.7 1.3 1 23 1269 1291 1269 1291 0.98
40 48 0.00025 0.047 16.1 3.9 1 23 1297 1319 1297 1319 0.98
41 48 0.0018 0.34 13.4 1.9 1 23 1325 1347 1325 1347 0.97
42 48 0.0031 0.58 12.7 2.6 3 23 1355 1375 1353 1375 0.95
43 48 0.45 83 5.9 6.0 1 23 1386 1408 1386 1408 0.95
44 48 0.00033 0.062 15.7 0.2 2 23 1415 1436 1414 1436 0.97
45 48 1.7e-05 0.0031 19.8 0.6 1 23 1442 1464 1442 1464 0.98
46 48 1.5e-05 0.0027 20.0 2.1 1 23 1470 1492 1470 1492 0.95
47 48 5.9e-06 0.0011 21.2 0.3 2 23 1516 1537 1515 1537 0.97
48 48 0.016 2.9 10.5 0.3 1 22 1543 1564 1543 1564 0.97

Sequence Information

Coding Sequence
ATGGCAAAGCACAACCCGGTCAACCAGATTAAATGTGACGTGTGTGACAAAACATGTCCATCTGGGTTTCAGCTGAAGCAACACTTAAAAATTCATGAGACGGTGAAGCTATACTCGTGCGATATGTGTTCGTATTCGAGCCACGTACAGGTGAACCTTCACGCTCATAGAAAGAGGCACTTCAATGATTACAAGGCGAGGTGTGACGTGTGTAACAGAGGTTTCTACTCCATGTGTTCGTACAAGTTACACCAGGCCATCCATAAAGACGAGATGCCCTTCAGTTGCGACGTCTGCGGTAAGCTGTACAAGTTCAAACACTACCTAACCGACCACCTTCAGACGCACAAACCAGACTACGAGGAAACCGTCTTAAAGTTCAAGTGCCGGTATTGCGGCAAGGGTTTTCGCTACCGGGGGAAGTGCGAGGTCCACGAGAAGCGGCACCTGGGCCACAAAGAAGTGATGTGCGACATATGCGGCAAAGCGCTGAGCACGGTCCGCGAGCTGGGCCTCCACATGCGCCGTCATACCGGGGAGAAGCCATTCGTCTGCAGCTATTGCGGGAAGACGTTCAGCCGCCTGAACTCGTTGACTCTCCACGTGCGTGTCCATACGGGCGAGCGACCGTACACCTGCGGCGAGTGCGGGAAGTCGTTCACGCAGCACTCGAGCTACGCTATCCACAAGCGCCACCATACCGGCGAGAGGCCTTACCGTTGTCTGATCTGTGAGAAAACCTTTGTGTCGAAGTCTCTGTTGAAGTACCACATGAGGTCTCATGAAGAACACAAGTCCCCAAGTAGTTTCTTTGTTGAACAATCTGAGGGAAAATCTAAACGCTCCAAGGTTAAGAGGAAAGCTTCAAACTCCGTTTCTGGTCCTGTTAAGAGGAAGGTATCTAACAAAAAGTCAATCAAATGTAAAATTTGCGGAAACGAGTACAAGCGAAACAGCACCCTGCAGAATCACTTGCTCGTCCACGGTCAGGATTCCCACGAGTGCGACCTTTGTAACAAACCGTTCAAGTCCGAGTGGCATCTAAAACAACACAAGAAATACCACAGCAAAGCAAGACAGTACAAATGTGACATGTGTGGATACGAGACGTGCATTAAGGGTAACCTCCTCTGTCACAAAAGGAAACACTTAAAACATTACATTGTCAAGTGTGATGCGTGTAATAAAGGCTTCTATAGGACATGTGATTACCAAgaacatgttaaaatacacaCAGGCGAGAAACCTCACAGATGCAACGAGTGCGGAAAGTCGTTCCCCGGCAAACACCGATTGGCCAATCACAAGAAAACTCATGAACCGGACTACGAAGAGACAGTTCTTCGGTTCAGGTGCAAGTTTTGTAACAAAGGTTTCCCCGGTCAGAGTCTGTGCACGAGGCATGAGAAACACCACCTGGGTGTCAAGGAGTTCATCTGCGACGTTTGCGGCAAAGCCCTTAGCTCGGCGCATGCTATGAGTCTCCACCTTCGCATCCACACTGGGGAAAAACCGTTTGTGTGCGACTTCTGCGGTAAGATGTTTGGTCGGTCGTCTGCTCTCACTATGCACTTACGTGTTCACACGGGTGAGCGTCCTTATGTGTGCAACGTGTGTGGGAAGGGGTTCACCCAGCCGTCGACTCTCACGATTCACAAGCGTTACCACACGGGCCAGAAACCGTTCACAAGTGATAACATTGTTGCTAAATCGCCAGAGAAATCTAAACGCCATAACAAGAACTCTCTGATTTCGCCAAAGTCGCTATCTAGTCCTATAGAACTTATGGAATTGGAGTGGGGGAGCGCAGAGAACCCCAAAtggaaatgtaaaatatgtgagAAAGTGTTCAAACACAAATGTTCGCTGAAGAACCACATGCCGCTTCATAACACCGAGGGCTCTTTCGAATGCGACATCTGCCATAAGCTTCTCAAATCAGATTATCAGTTGATTCGACATAAAAAGAACCACAGCCAATCGAAAGACTACAAATGCGGCATCTGCAGCTACGAGACGTGCTCCAACAGTAAAATCGAGAGTCATAAGAGGAGACATCTGAATGAGTACAAAGTGAAGTGTGAGCTGTGTAATAAAGGTTTCTACACCTCACGAGAGTTCCAGGAGCACACCATGCTCCACACGGGAGAAAGGCCCCACTCCTGCGAGGTCTGCGGTAAGTCCTACCCCAACAAATACCGGCTGGCGGACCACAAGAAGCTGCATGAGCCGAACTACGAGGAGATGTTCCTCAGGTTCAAGTGCCGGTTCTGCGACAAGGGCTTCCCCCGGCAAAGCTCTTGCGTCCGTCACGAGAAGCACCACCTCGGCGTCCGGGAATACGCCTGCGATGTGTGCGGCAAGGCGCTCAGTTCGGGGCCTCTCTTAAAGCTCCACATGCGCATCCACACGGGGGAGAAACCGTTTGCCTGCGACGTGTGCGGTAAATCGTTTGGGCGCGTATATGCCCTGACCATGCACTACCGCGTCCATACCGGTGAGCGCCCATACGGTTGCTCCGAGTGCGGGAAGAGGTTCACACAACACTCGAGTCTAACAATACACATGCGCTATCATACGGGGCAGAAGCCGTACGTGTGTAGCACGTGCACGAGATACACAAGTGATAAGAATCGGTTTGTAGTAGTGAAATCGGAAGATAAATCAACTCGCCCCCAGGACACAGAGAAAACATATCCCCTGGAAGTAAACAAATTGCAGAATGAGATAAAGTGTGAAATATGCGGCAAGATATACAAACGCCGCAGCACGCTACAGAAGCACATGTTCCTTCACGACGGTGCCCATTCCCACGACTGTGTCGTGTGTCAGAAGTCGTTTAGGTCCGAGTGGCACTTGAAACAGCACATGAAGGCTCACACCAGAGAAAAGAACTTCAAATGTGATATCTGCGGGTTTCGGTTCGGTCACAACTACACACTAGAAAACCATAAAAAGAGACATTCGAACAGTTACAGGCACAACTGCAACCTTTGCGGTCACGGATTCCACAGCAACCACGAGTTCTTAGTACATAAGAAGGTTCACACCGGCGAGAGGCCGGATTGTAGCGAGGTTTGCGGCAAGTCTTATCCCAACAAGTACAGGCTTGTCGACCACAAAATGATTCATCGACCTGACTACGAGGAGACGTTTCTTCGGTTCAAATGTAAGCTTTGCGGTAAAGGTTTCCGTCAACAGAGTCATCGCGCGACCCACGAGAAGCGTCACTTCGGGCAGAAGGACCACATGTGCGACATTTGCGGCCGAGCCGTCAACTCCCCGACCGAGTTAAAGTTCCACATGCGCGGTCACACCGGCGAGAAGCCTTATGTTTGCCCCTACTGTGATAAGGCGTTTATCCGGCTGATGGCTCTCAAGATACATCTCCGTGTCCATACGGGAGAGCGCCCGCACGGCTGTGACCACTGTGACAAGAGGTTCACGCAGCGCTCAAGTCTCACCATACACATGCGATACCACACTGGGGTCAGACCGTACAAGTGCGACACATGTTCAAAAACGTTGGCAACTGATATCAGTGGCTTTGTCGTTGAAAAATCGGGAGAGAAACCTAGGAACACCAAAGAGACGGCGAAACCTGtccccttaaaaataaaaccaaaacgCACAAAAAATGACACGGCAACGAAAAAATCCAAAcacctaaataaaaaactgaaatctGACTCTTTGAGGGTGAGCACATCGAAACGAGTGataaagtgtaaaatatgtgGCAAAATGTACAAACGCAACAGCACGCTCCGGAACCATATGGTCGTCCACGACAACAGTCACTCCTACGAGTGCGACATCTGTCAGAAGGAACTCAAGTCGGAATGGCATCTGAAGCAGCACGTCAAGAGCCACATGAGGGAGAAGAAATTCAAGTGTGATATCTGCGGTTTCCAGTTCGGTCATAAATACAGTTTAGAGAACCACAAAAAGAGGCATTTGAAAGATTACAGACACAGATGTGATATTTGCGACCGAGGGTTTTACAGTAACAACGAATTTCTCGAACATAAAAAGGTGCACACGGGTGAAAGGTCACATCTTTGTGAGATCTGTAACAAGTCCTATCCAAATAAATACAGGCTGATCTATCATAAAAAGATGCACGAGCCCGACTATGAGGAGATGTTTCTACGGTTCAAGTGTAAGTTCTGTGAGAAAGGTTTCCGACAGCGTAGCAAGTGTGTCCTCCACGAGAAGCGGCATGTCGGACAGAAGGAGCTGGTGTGCGACGTTTGCGGTCAGGCTCTCCACACTCCGACCGAGTTGAAACTTCACATGCGCATGCATACCGGCGAGAAGCCTTTCATCTGCAACTATTGCGCCAAGGCGTTCAGTCGGTTAACGTCTCTTACCATGCATCTACGCATCCACACGGGCGAACGGCCGTACCCTTGTATCGAGTGCGGGAAGAGGTTCACACAGTGTTCCAGTCTAACGATACACATGCGATACCATACGGGTTTGAGACCTTTCGAATGCAAGACATGTTTGAAAACACGCCACATAGAGGAGGTGCACTTTTCGGTTTGCAACTATTGCGGGAAGACCCTTGCGGACAAGGGGTCGCTCAAGTCACACCAGCGAATCCACACGGGTGAACGGCCTTACAGCTGCGATTCTTGCGGCAAGTCGTTAGTGAAGTGTGGCGCTCTGGTGGTCCATAGGAGGACCCGTACCAGAGAGAGCGTACTGATGTACTAA
Protein Sequence
MAKHNPVNQIKCDVCDKTCPSGFQLKQHLKIHETVKLYSCDMCSYSSHVQVNLHAHRKRHFNDYKARCDVCNRGFYSMCSYKLHQAIHKDEMPFSCDVCGKLYKFKHYLTDHLQTHKPDYEETVLKFKCRYCGKGFRYRGKCEVHEKRHLGHKEVMCDICGKALSTVRELGLHMRRHTGEKPFVCSYCGKTFSRLNSLTLHVRVHTGERPYTCGECGKSFTQHSSYAIHKRHHTGERPYRCLICEKTFVSKSLLKYHMRSHEEHKSPSSFFVEQSEGKSKRSKVKRKASNSVSGPVKRKVSNKKSIKCKICGNEYKRNSTLQNHLLVHGQDSHECDLCNKPFKSEWHLKQHKKYHSKARQYKCDMCGYETCIKGNLLCHKRKHLKHYIVKCDACNKGFYRTCDYQEHVKIHTGEKPHRCNECGKSFPGKHRLANHKKTHEPDYEETVLRFRCKFCNKGFPGQSLCTRHEKHHLGVKEFICDVCGKALSSAHAMSLHLRIHTGEKPFVCDFCGKMFGRSSALTMHLRVHTGERPYVCNVCGKGFTQPSTLTIHKRYHTGQKPFTSDNIVAKSPEKSKRHNKNSLISPKSLSSPIELMELEWGSAENPKWKCKICEKVFKHKCSLKNHMPLHNTEGSFECDICHKLLKSDYQLIRHKKNHSQSKDYKCGICSYETCSNSKIESHKRRHLNEYKVKCELCNKGFYTSREFQEHTMLHTGERPHSCEVCGKSYPNKYRLADHKKLHEPNYEEMFLRFKCRFCDKGFPRQSSCVRHEKHHLGVREYACDVCGKALSSGPLLKLHMRIHTGEKPFACDVCGKSFGRVYALTMHYRVHTGERPYGCSECGKRFTQHSSLTIHMRYHTGQKPYVCSTCTRYTSDKNRFVVVKSEDKSTRPQDTEKTYPLEVNKLQNEIKCEICGKIYKRRSTLQKHMFLHDGAHSHDCVVCQKSFRSEWHLKQHMKAHTREKNFKCDICGFRFGHNYTLENHKKRHSNSYRHNCNLCGHGFHSNHEFLVHKKVHTGERPDCSEVCGKSYPNKYRLVDHKMIHRPDYEETFLRFKCKLCGKGFRQQSHRATHEKRHFGQKDHMCDICGRAVNSPTELKFHMRGHTGEKPYVCPYCDKAFIRLMALKIHLRVHTGERPHGCDHCDKRFTQRSSLTIHMRYHTGVRPYKCDTCSKTLATDISGFVVEKSGEKPRNTKETAKPVPLKIKPKRTKNDTATKKSKHLNKKLKSDSLRVSTSKRVIKCKICGKMYKRNSTLRNHMVVHDNSHSYECDICQKELKSEWHLKQHVKSHMREKKFKCDICGFQFGHKYSLENHKKRHLKDYRHRCDICDRGFYSNNEFLEHKKVHTGERSHLCEICNKSYPNKYRLIYHKKMHEPDYEEMFLRFKCKFCEKGFRQRSKCVLHEKRHVGQKELVCDVCGQALHTPTELKLHMRMHTGEKPFICNYCAKAFSRLTSLTMHLRIHTGERPYPCIECGKRFTQCSSLTIHMRYHTGLRPFECKTCLKTRHIEEVHFSVCNYCGKTLADKGSLKSHQRIHTGERPYSCDSCGKSLVKCGALVVHRRTRTRESVLMY*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-