Tgen004940.1
Basic Information
- Insect
- Timema genevievae
- Gene Symbol
- -
- Assembly
- GCA_902155825.1
- Location
- CABFWO010000202.1:257597-258046[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2e-07 0.00014 23.4 0.0 5 39 19 54 15 60 0.81
Sequence Information
- Coding Sequence
- ATGGTTCGGGCTTTCAAGAAAAAAACTGAGCGTGGTGAAACCCTTCCTGGTGTTATATTAAGAGCAGTCAGATGTGTTTTTCGAGACCACAAATCTATCAGACAAGCTGCAAACGAATTTCACATTAACTATCGAACCCTTGCTCGATACTGCAAAAAGATATCCCCAAGTGAATTAAATGACGACCAATTGACTGTCCCATCAATTCCTGTTGGTTATCAAAAAATTCGTCAGGTGTTCAGTGAATTGCAGGAAAAGGAGCTATTAGCCTATGTAATTCAAGCTTCAGACATTTACTTCGGGCTATCTCCTAAAGAAGTAAGAAATCTTGCTTATGAAGTTGCTGTagctaatgaaattaaaatgccGCAATCAtggactgaaaaaaaaattgctggggTCGATTGGTTTTCTAGTTTTTTTGAAGCGAAACCCAACATTGTCCATTAG
- Protein Sequence
- MVRAFKKKTERGETLPGVILRAVRCVFRDHKSIRQAANEFHINYRTLARYCKKISPSELNDDQLTVPSIPVGYQKIRQVFSELQEKELLAYVIQASDIYFGLSPKEVRNLAYEVAVANEIKMPQSWTEKKIAGVDWFSSFFEAKPNIVH*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01446528;
- 90% Identity
- iTF_01444707;
- 80% Identity
- -