Tgen038895.1
Basic Information
- Insect
- Timema genevievae
- Gene Symbol
- PAOX
- Assembly
- GCA_902155825.1
- Location
- CABFWO010004270.1:1-7938[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.2e-08 4.5e-05 25.1 0.0 11 41 2 32 1 35 0.93
Sequence Information
- Coding Sequence
- NCTGCCATTCTTCGAGGTGAAATCTCTGTTAGGAAAGCAGCTACAGAATACAAAATTCCTCGAAGAATATTGAGAAGGCACCTGGAAGAAAAGAAACAGGAGAAGTGTAAATTATGTCGTAAGGCGGCTCTAACTGAGGAGCAAGAACAAGAGTTGTGCAAACGGATAGGAGGATTGGCAGCAGTGGGCTACCCGATAGCACCAAATGTGATTCGTCTTTGTGTCTACAAATTTTTCAACACTTATAAAACCAAGCACCAATTTTCAAGTGTTCAGGCCACAGCTGGTAGGAAGTGGAAGTGCAGTTTTCGTGCTCTAAATCCACAAATCACCATCATAAAAGCTCAAAACCTCAATCCTGCCCGAGCACAAAAGATGAACAGCCACTCAAATAAGAAGAAAGACCTAGTGGTTCAGCCTGGCAGTCTTGAACCCTGCGTGGCAGAGCCTCGAGTAGTAATTGTTGGAGGAGGTATCGCAGGTCTGGCTGCGGCTAGCCGGCTAGCCAACAGCAATTTCCAGAACTTCACCATCCTGGAATCATCAGAGAGGCCTGGGGGACGCATCCATTCTTGTTGGTTAGCCGACTCTGGTGCCGAGCTTGGAGCATCGTGGATTTACGGTGGCTGCGCGGCGAATCCGGTGTTCGGACTCGCGACACAAGAGGGACTGCTCAGACTCCCCCTAAACCGGATTGAAGGAAGCCATGGGTTCTTCTATTCCAGTGAGGGCCGTGCAGTGGACGTCACCCTCAGTATCCGCGCTAGCAAGGCGTTCCACTTGGCGGAGAAGGCCGCCTTCAACCTCCACACCATCCAAAAAAATTCGAACCAGCACTGGTCCATGCAGGATTTCATGTCGATGCAGGCAGATCAAGAACTCCTGCGTTTCCAGGAGAACGAGAGGGCGGACGCTTCTAAGGTGATTACGGCTCTAGCAAACGATCTCCGTTGCCGGATCGGAGATGACCTTTCTTTGGTCTCCGCTGGCCAGTTTGGGAGTTTTGTAAGCATTCCTGGGGGGAAGATAAGAGTGCCGCTCGGCTACGTTGGCGTCTTAGCCTCCTTGATCAGGAATATCCCCGACTGCTCCTTGCGGTACTGTATGCCAGTGCAGACTATCCATTGGAATGCCACTGGTGCCACTGGACAGCGCGCTTGCGTAAGTTGTGCCAATGGCGAGGAGATCGCTTGCGACTATGTCATCTTTACGTCGTCTTTGGGCGTACTCAAGGATCAGGCGGCGGAAATGTTCTCACCACCTCTACCAGAGGAGAAGATAAACGCCATCAAGAAGCTCGGTTTTGGTACTGTTAACAAGATCTTCATGGAGTACAACCGGCCTTTCTGGCATCCTAAGGATGGTTTCATCCGACTGGGTTGGTCCCCTGAACAGTTAGAAAACCGTTCAGAGTGGGTGAAAGGTATTTGTACTATAGAACCTTCACCTGGGAGTAAGAAGGTCCTGTGCGCATCGTTAGGAGGCCCCGAGGCAGTCTCCATGGAGAAATGTTCCGATGAAGAGGTGGCAGAGACGATAACAAGAGTGCTAAGGAGGTTCACTGGAAACACTCTCATCCCTTTCCCCAACAATCTGATGAGATCCAGCTGGGCCATGGACCCAAAATTCAGAGGCTCGCTAAGCTACCTGGGTCTGGAATCCACACCGAGTCACATGGTTGACCTTGGCATTCCAGTGCCTGTAAGTGGTGGGTCTCTGGCACCAGTGATCCTCTTCGCCGGGGAGGCAACGCACCCAGAGTTCTATGGAACGACCCATGGTGCCCTGATGAGTGGAATAAGAGAAGCAGACCGCATCATCCAGTTAACAAACCAATATAAAGGACCACCGCAGCCACGGGAAGGGAtacctatataa
- Protein Sequence
- XAILRGEISVRKAATEYKIPRRILRRHLEEKKQEKCKLCRKAALTEEQEQELCKRIGGLAAVGYPIAPNVIRLCVYKFFNTYKTKHQFSSVQATAGRKWKCSFRALNPQITIIKAQNLNPARAQKMNSHSNKKKDLVVQPGSLEPCVAEPRVVIVGGGIAGLAAASRLANSNFQNFTILESSERPGGRIHSCWLADSGAELGASWIYGGCAANPVFGLATQEGLLRLPLNRIEGSHGFFYSSEGRAVDVTLSIRASKAFHLAEKAAFNLHTIQKNSNQHWSMQDFMSMQADQELLRFQENERADASKVITALANDLRCRIGDDLSLVSAGQFGSFVSIPGGKIRVPLGYVGVLASLIRNIPDCSLRYCMPVQTIHWNATGATGQRACVSCANGEEIACDYVIFTSSLGVLKDQAAEMFSPPLPEEKINAIKKLGFGTVNKIFMEYNRPFWHPKDGFIRLGWSPEQLENRSEWVKGICTIEPSPGSKKVLCASLGGPEAVSMEKCSDEEVAETITRVLRRFTGNTLIPFPNNLMRSSWAMDPKFRGSLSYLGLESTPSHMVDLGIPVPVSGGSLAPVILFAGEATHPEFYGTTHGALMSGIREADRIIQLTNQYKGPPQPREGIPI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01449403;
- 90% Identity
- -
- 80% Identity
- -