Tgen008888.2
Basic Information
- Insect
- Timema genevievae
- Gene Symbol
- -
- Assembly
- GCA_902155825.1
- Location
- CABFWO010000433.1:83836-85752[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9e-09 6.4e-06 27.8 0.0 5 36 1 32 1 39 0.90
Sequence Information
- Coding Sequence
- ATGACAAAAGCAATTGATACAGTTCGAAAAAAGCAGATGGGATGGAAGAAGGCtagtaaacaatttaatgtaCCGAAAACGACGCTTATGAGGTTGTCTAACATTAAGTACGGAACACCTGAGGAAGCAGCAAAAACAAATAGAGGCAGGCCTACAGTTTTGGGTAAAGATATTGAAGAAGAGCTGGTTCGTTATTGTCTTGCTATGGAGGCGTCTTTTTTTGGTCTTACTCGTGCTGACTTGCGAAGAATAGCCGTACAACTGGCAGAGAGAAATAACATTGCACATCCTTTCAAAGACGAAATTGCTGGGAAAAAGTGGGTTAGTCTTTTCCTAAAACGTCACAAAACCAAACTGTCGGAAAGGAAGCCTACCGGAACATCCTATAGTAGGGCCCTTGGATTTAGCAAAGAAAACACGCAAAAATTCTATAAGCTCCTTGAAGATGTTTACGAAAAGGATAAATTCACTCCTGACAGAATTTACAATGTCGATGAGAGTGGTATTACTATTGTACAATCAAAGGTACCAAAAGTAATTGGCCTTCGAGGTAAAAAACAGGTAGCTGCTTTGACGTCAGGAGAACGTGGGGCTCTTATAACATTTGTTGCTTGCATGAACGCAGCTGGTTCTTTTGTGCCTCCCTTAGTAATTTTTCCGagaaaaaatatgagtgaacaGTTAAAAAAGGGGGCTCCACCAGGAACGATTTTTGCAGCGCACCCCTCAGGTTGGATCCAAACCAACTCTTTCACGCAGTGGTTTCGACACTTCATCGAATATTCCAGCCCTACAAAGGAAAAACCTGTGCTGTTACTCTTGGATGGTCACTACAgccacacacaaaatattgaattgatCGACttagcaaaacaaaacaatgttacAATTGTTTCACTGCCACCTCACTGCTCACACAAGTTACAACCCTTAGATAAGACTTTCATGGGTCCTCTCAAAGTCTACTATAGCGAGGAAATCAGGCAGTGGTTAAGGCACAATGAACGTGCTCTCAGTGCTTTTGATGTAATGGAGCTGTTCGGCAAAGCCTATATTAGATGCCAAACTGCTCAAATAGCAATTAACGGATTTGAAGTAACAGGCATATACCCATTGAACAAAAACCAGTTCCCAGATTCTGAATACATTGAAGAGGCCAACAAAGGGCAAGgttcttatttttatgaatctgtgtttaaaaaaaagacatcaGGAAATCATCTGAGCCTCCCAGAGAACAGAGAAGAATGTGATGAGGGCGAATCCCAAGTTATTGAGTTGGAGTTTGACCGAAATCAACCATCAACATCTTCAGCAGCTCAGGGTGTTCCTCTGTCAACAGTTTCTAATAAACAACAGTTTCTTGAAGATTCTCAAGGTACCACCATGACTTCTAAAACCAGCCCGTTTGACATCACCCCCGTTCCAAAAATTCATAAGAGGGCCTCGAAAAGGGGACGAAAGGCATGCAGCTCTACGGTCATTACATCTACGCCTTACAAAGCCAAATTGGTGGAAGCCAAACAAGCTAACAAGCAACCGGGGAAACGTGGTCGTGGACGCGGGAGCAACCGTGGCTGGGGACGTGGGTTAGCACCTGCACTAGAGCCTTCAGAAGTTAATAAAGGGAAAGAACTAGTGAAAAAGCGCCtcagttttgaaaaaaagatcGAAGAATCCAGCAGTGAAGATGGTGAAAGCGTGTCCTCCGGTACATCAGATTTAGAGGCTGCTCCAGGAGTTTCACCTTCCACAGACGATGATGTTTGGTGTATGTTTTGTGATGGCAAATTTTCAGATGACACTAAAGGGGAACTTTGGGTCATGTGCGTGATGTGTTCGCTGTGGACCCATGTCGATTGTGCAGGGgctgaaaaaaatacttatatttgcGACTTTTGTCGCCAGCCtaagtaa
- Protein Sequence
- MTKAIDTVRKKQMGWKKASKQFNVPKTTLMRLSNIKYGTPEEAAKTNRGRPTVLGKDIEEELVRYCLAMEASFFGLTRADLRRIAVQLAERNNIAHPFKDEIAGKKWVSLFLKRHKTKLSERKPTGTSYSRALGFSKENTQKFYKLLEDVYEKDKFTPDRIYNVDESGITIVQSKVPKVIGLRGKKQVAALTSGERGALITFVACMNAAGSFVPPLVIFPRKNMSEQLKKGAPPGTIFAAHPSGWIQTNSFTQWFRHFIEYSSPTKEKPVLLLLDGHYSHTQNIELIDLAKQNNVTIVSLPPHCSHKLQPLDKTFMGPLKVYYSEEIRQWLRHNERALSAFDVMELFGKAYIRCQTAQIAINGFEVTGIYPLNKNQFPDSEYIEEANKGQGSYFYESVFKKKTSGNHLSLPENREECDEGESQVIELEFDRNQPSTSSAAQGVPLSTVSNKQQFLEDSQGTTMTSKTSPFDITPVPKIHKRASKRGRKACSSTVITSTPYKAKLVEAKQANKQPGKRGRGRGSNRGWGRGLAPALEPSEVNKGKELVKKRLSFEKKIEESSSEDGESVSSGTSDLEAAPGVSPSTDDDVWCMFCDGKFSDDTKGELWVMCVMCSLWTHVDCAGAEKNTYICDFCRQPK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01446443;
- 90% Identity
- iTF_01447469; iTF_01447470; iTF_01449512; iTF_01449511; iTF_01449468;
- 80% Identity
- iTF_01447469;