Tgen032252.1
Basic Information
- Insect
- Timema genevievae
- Gene Symbol
- -
- Assembly
- GCA_902155825.1
- Location
- CABFWO010002997.1:95070-95960[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.5e-09 2.5e-06 29.1 0.0 1 40 17 56 17 61 0.92
Sequence Information
- Coding Sequence
- ATGCCGATAGAGTATAAATCTAAAACCCAGAAGCCTTACAAAAAGCATGATCCAACAGAATTGAAGAAAGCAGTTGAGgaggttaaaaataatgtgcTAACATTGAGGAAAGCTGCAGAGAAATATGGAACAAACTATTCGGTTATATATCGCCACTTGAAAAAGGGGGATACCATGAAAGCTCAGGGAGGACATACTTCTTTGTCTAAAAGTGAAGAGCAAATTCTTGTAGATAGATTGAAAACTTGTGCAGAATGGGGATATCCTGTAGACACGTTAACACTAAGAATGATTGTAAAGGAGTTCTTAGACAGAAAAGGAAAACAagttttgagatttaaaaacaacttaccAGGAAAAGAATTTatctattcatttttaaagcGTCACAGACAAGATTTATCTTATATAATGTGCCAAAACATTAAGAGAAATCGAGCTGCTGTCTCGCATGAAATCATCAATGATTATTTTAACAGGTTGCAAGAAGAGCTTCAGGGTGTGCCACCTCAAAACATCGTGAATTTTGACGAGACGAATTTGTGCGATGACCCTGGCAAAAAGAAGGTTATTACCAGACGAGGCTGCAAATATACCGAGAGGCTGATAAATAGCACAAAAGCATCTTCCTCTGTAATTTTTAGCGCTGCAGGGGACGGTACAATATTACCTCCATATGTAGTATATAAGGCTCTACACATGTACAACTCATGGTCTGAAAATGGGCCTAGATATACCAGGTATAATCGTACAAAATCGGGATGGTTTGACAGCTTTTGTTTCAAGGACTGGATTATGACAGTAGCCATCCCTTACTTGAAGAAGCAAACAGGAAAGAAGATATTGATTGGGGATAATCTCGCCTCGCATTTGACGCTGGAGGTTATCTGA
- Protein Sequence
- MPIEYKSKTQKPYKKHDPTELKKAVEEVKNNVLTLRKAAEKYGTNYSVIYRHLKKGDTMKAQGGHTSLSKSEEQILVDRLKTCAEWGYPVDTLTLRMIVKEFLDRKGKQVLRFKNNLPGKEFIYSFLKRHRQDLSYIMCQNIKRNRAAVSHEIINDYFNRLQEELQGVPPQNIVNFDETNLCDDPGKKKVITRRGCKYTERLINSTKASSSVIFSAAGDGTILPPYVVYKALHMYNSWSENGPRYTRYNRTKSGWFDSFCFKDWIMTVAIPYLKKQTGKKILIGDNLASHLTLEVI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01449505;
- 90% Identity
- iTF_01449505;
- 80% Identity
- -