Tgen022585.1
Basic Information
- Insect
- Timema genevievae
- Gene Symbol
- -
- Assembly
- GCA_902155825.1
- Location
- CABFWO010001655.1:64630-65953[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.2e-11 4.5e-08 34.7 0.0 2 37 11 46 10 48 0.94
Sequence Information
- Coding Sequence
- ATGACGAAGCGAAAATATGGAGCTTGGAGTGAATCGGATATGGAACGAGCCCTCGCAGCTTATAGAAATGGGGACATGGGTTTTAATGAATGCTGTCGCCAATACGGTATTTCAAAGCCAACTCTCAAGCGCTACTTAGACTATGTCCCTcccatgttaatttttaagcGCATGAGAATGGCTAATGAATTAAAAGTTGGGGCTCCACCTGAGGTTTCTGAAACAGGCTACATAAACAGTGACCTCTTCATCCAGTggctaaaacattttattgctgCCGTCAAACCAAACAACGATAATAAAATTCTCTTAGTTCTAGACGGCCACACAACACATTCAAAGAACTTGGAAGCTTTGGATATAGCAATAGAAGCCGGAGTAATTATGTTGCAGTTGCCTGGCCACACAACGCATCGGGTTCAGCCATTAGACAAGTCGTTTTTTAAACCACTGAAAGGGTTCTACACACAAGTGGTTGAAAAATGGCTTCGTACCAATCCAGGACTGTGTGTTACACAATACCAGGTGACTCAACTTGTGGCAGAAGCCTATGCAAGGGCAGCGACAGTTGAGAATTCCATTAATGGATTCCGTGGATGTGGAGTCTGGCCAGTTGACCGTAATGTGTTTAAAGACTCTGACTTTTTACCAGCTGAATATCTTGAGCCTTCAGAAGATACCAATGTAGATGCACCACTTACTAAAGATGTCACCAATGGACCACCCACTGCACCTACTGCAGATGAAACCAATGACCGACCGGATGTTGCAGTAAAGCCAAAGGCTGGACCAGCCAACACCTCTCAACTTAATGTGTCAATTGAAGATATCTCACCAATTCCcaaacccccccaaaaaaaaagtgtcaaaacGAGCAGTCCATACAAGAATGATTTGCAAACAGCAAAAGAATTGCAAATGGCACAGGCCAAAGTAAAAcagttgaaaatgaaaatagagaaGGCCAAAGCAAATGAATTGAGACTGGCAAAgcccaagataaaaaaagaagtagccaatgctaagaaaaatgtttcatctGTGTGGAGAAATTTAGAAAAAGCAGATCTGCAAACCAACGGAGAAAGCCTACCATTTACTTCAACACAAACTGATGTTAGTATTGAAATCCAGCAAGAAGAATGGTTTTGTTCCGTATGTGAAGATCATTCCGTTGAGGACATGGTGCAGTGTTTGGTACGCTGGTCCTGGGTGCATGAAAGATGTGCAGGGGTCAAGTCAGgattaaaacagtttatttgtaTGGACTGCaaatag
- Protein Sequence
- MTKRKYGAWSESDMERALAAYRNGDMGFNECCRQYGISKPTLKRYLDYVPPMLIFKRMRMANELKVGAPPEVSETGYINSDLFIQWLKHFIAAVKPNNDNKILLVLDGHTTHSKNLEALDIAIEAGVIMLQLPGHTTHRVQPLDKSFFKPLKGFYTQVVEKWLRTNPGLCVTQYQVTQLVAEAYARAATVENSINGFRGCGVWPVDRNVFKDSDFLPAEYLEPSEDTNVDAPLTKDVTNGPPTAPTADETNDRPDVAVKPKAGPANTSQLNVSIEDISPIPKPPQKKSVKTSSPYKNDLQTAKELQMAQAKVKQLKMKIEKAKANELRLAKPKIKKEVANAKKNVSSVWRNLEKADLQTNGESLPFTSTQTDVSIEIQQEEWFCSVCEDHSVEDMVQCLVRWSWVHERCAGVKSGLKQFICMDCK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01449480; iTF_01447436; iTF_01447437; iTF_01447435; iTF_01447476; iTF_01447495; iTF_01447487;
- 90% Identity
- iTF_01447435;
- 80% Identity
- -