Tgen001980.1
Basic Information
- Insect
- Timema genevievae
- Gene Symbol
- -
- Assembly
- GCA_902155825.1
- Location
- CABFWO010000062.1:83334-83769[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.1e-14 6.5e-11 43.7 0.0 1 43 15 58 15 59 0.94
Sequence Information
- Coding Sequence
- ATGCCACGAAAATATATTCGTATAAGTAATCGCCAAAATTGGTCCGAGGAGAATATGGCGAAAGCAATTGATGAAGTTATTCAAGGAAATATGAGCTATAAGAAGGCATCTTTTGCTTATGATTTACCTCAGTCGACTCTTGAAGATCGTGTAAAAAAAGCCAAAATTGGAGCTTCAGTAGAAGTAGCAGCTAGAAAAGggatgggaAACTTCAAATGTGTGTTCACCGAGAACCAAGAAAGGGAACTTGTTCAGCATATAAAGTTCATGGAGATCCGCTTGTTTGGTCTCACAACGAAAGATGTAAGGCGTCTTGCTTACGAGTTAGCTGAGAAAAATTGA
- Protein Sequence
- MPRKYIRISNRQNWSEENMAKAIDEVIQGNMSYKKASFAYDLPQSTLEDRVKKAKIGASVEVAARKGMGNFKCVFTENQERELVQHIKFMEIRLFGLTTKDVRRLAYELAEKN*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01449397;
- 90% Identity
- iTF_01449421; iTF_01449397; iTF_01449396; iTF_01449395;
- 80% Identity
- iTF_01449397; iTF_01449396; iTF_01449395;