Tgen039503.1
Basic Information
- Insect
- Timema genevievae
- Gene Symbol
- lov
- Assembly
- GCA_902155825.1
- Location
- CABFWO010004397.1:16554-40545[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.5e-17 1.1e-14 55.8 0.0 1 44 393 436 393 437 0.96
Sequence Information
- Coding Sequence
- ATGGCGTCCTCCTCCCCTCACTACAGTCTGCGATGGAACAATCATCAGAACCACATCTTGAACGCCTTCGACACGCTGCTGCAGAACGAGACGCTGGTGGACGTGACGCTCGTGTGCGAGGAGACCAGCGTCCGAGCGCATAAGGTCGTCCTCTCAGCGTGCAGCCCATATTTCCAGAGGATATTCTCGGAGAATCCATGCAAACATCCAGTCATCGTTTTAAAAGATCTCAGAGGCTGGGAGGTGCAAGCAATAGTGGACTTTATGTACAAAGGAGAGATAAGTGTCATCCAAGAACAGCTCACTTCGCTGATCAAGGCCGCGGAGTCACTTCAGGTCCGGGGGCTTGCGCACACCGAGCACGTGGTCTCGGAGACCGGCGGCGCTAAGGACCTACCTCCTCGCTCTACGCCACAACCACCTCCCTTCTCGCCACCTCCCCCACTCTCAAGCCTGGAGAAGATGGGCCTGTTCACGCCGCACTCGAGGAGCTTCTCGTCGTCGGTCCTCCACGACCCGCCCATGATGTCCCCCTTCTCCCCCTCGCCCATCCCCAACTTTGAGCCGCCCCTGAAGCTCCCTCAGATCCAGCATCTGCCGCACATTTCGTTCGGCGACGCCTTGGACCACTGCTCTTCTCCGCAGCCCAGGAGAAAGCAGGCGCGTCCCCGGAGAAGATCAGGCGACCTGAGCGGCGTCCAGGACCTGTCCAAACCTCCCCCTCCGCCTCCTACGCCGGCGGTATCTCCACCTCCCGTGCCGGACACGGCCGAGAACCTTTCCATGAAGCGaccaaacaacaataacaatcatCACCCACCGACCAGTCAGAGTAGCAACTCTCACCACCAGACTCTACCGCCGGCACCGGCGCGGACGCCAGTCGGCTCACCCCATCCTCTGCCTCCTCCCTCGCTGAAGACGGAGAGCGAAGAGTCGCAGCTTCCGGACAACTGCAGGTCCGACATGCACACACCAGAGAGGGATAGAGAGAGGTTGGAGTATTGTAACAGCGCCGAGTCCCTCAGCTTACCTCCGCCCCCTCCGGACTCTTCTTTAGACAACTCCAATTTCCCGCACCTGTCGTCCATGTCTGCGCTGTCACTCACACCACCGCACATGGGGAGGCCCAAGGGACAGCACAGCGCCCCGCGGGGGGGCCCTCCCCGCTCATGGACAAATGCCGAGCTGACTGAGGCCCTCCAGCACGTATGGAACAAGAAGATGACAACGTCTCAGGCGTCCCGGATCTTTGGAATCCCTTACAACAGCCTCCTGATGTACGTACGCGGCAAGTACGGCAAATCCCTCAAACTGGAGCAGCTGAAGAAGGACTGCTTGGGCGGTCCTGGTGGGCCGTTGGATCTCCTAGGGCTAGGCCCCTTgggaccccctccccccaacatcaacaacaacaacgcCACTGGTAAGTCCAACCCAGAGGACCTGTTAGGCCCCCCGGGGTCTGAGCACGACCTCGTTGCGGCGATGGGCCCCGGTTTCAACCCTTACTCGCCGGCCAGCTTCTACCCCGACTTTGCCGCCTCGTTCCCTGTCCCGGTGAGCATGATCCACTTGCTGCCCCAGTCGGAGAAGAATCGGGAGCTCTTCCCACCCGTCTCGATGCCTATGCCTCTCGACATCTCCATGAGCAAGGACGACGACTGTAAGAACAGCAGCGGTCGGCGGTCACGAGAGGACAACAGTTCGGCAGAGGAAGAACACGAGCAGCCGCCAGCGCGGGAAGAAGCTATGCAGCTCGTCGAACAGAACGGTCAGAACTAA
- Protein Sequence
- MASSSPHYSLRWNNHQNHILNAFDTLLQNETLVDVTLVCEETSVRAHKVVLSACSPYFQRIFSENPCKHPVIVLKDLRGWEVQAIVDFMYKGEISVIQEQLTSLIKAAESLQVRGLAHTEHVVSETGGAKDLPPRSTPQPPPFSPPPPLSSLEKMGLFTPHSRSFSSSVLHDPPMMSPFSPSPIPNFEPPLKLPQIQHLPHISFGDALDHCSSPQPRRKQARPRRRSGDLSGVQDLSKPPPPPPTPAVSPPPVPDTAENLSMKRPNNNNNHHPPTSQSSNSHHQTLPPAPARTPVGSPHPLPPPSLKTESEESQLPDNCRSDMHTPERDRERLEYCNSAESLSLPPPPPDSSLDNSNFPHLSSMSALSLTPPHMGRPKGQHSAPRGGPPRSWTNAELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLKKDCLGGPGGPLDLLGLGPLGPPPPNINNNNATGKSNPEDLLGPPGSEHDLVAAMGPGFNPYSPASFYPDFAASFPVPVSMIHLLPQSEKNRELFPPVSMPMPLDISMSKDDDCKNSSGRRSREDNSSAEEEHEQPPAREEAMQLVEQNGQN*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01447687; iTF_01446721; iTF_01446405; iTF_01450707; iTF_01450390; iTF_01445780; iTF_01445569; iTF_01448373; iTF_01448683; iTF_01444894; iTF_01444626;
- 90% Identity
- iTF_01447687; iTF_01446405; iTF_01446721; iTF_01445780; iTF_01445569; iTF_01448373; iTF_01448683; iTF_01450390; iTF_01450707; iTF_01444894; iTF_01444626;
- 80% Identity
- iTF_01447687;