Tdou002547.1
Basic Information
- Insect
- Timema douglasi
- Gene Symbol
- stc
- Assembly
- GCA_901482245.1
- Location
- CABEEJ010000103.1:214893-225916[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 1.9 5.9e+04 -3.5 1.6 15 19 390 394 389 394 0.81 2 6 0.064 2e+03 1.2 0.2 4 10 423 429 422 430 0.95 3 6 2e-07 0.0062 18.8 13.5 4 18 440 454 438 455 0.94 4 6 1e-06 0.031 16.6 11.0 1 18 491 508 491 509 0.96 5 6 1.1 3.3e+04 -2.7 1.1 8 13 514 519 513 520 0.76 6 6 2.3e-08 0.00072 21.8 14.6 1 18 549 566 549 567 0.97
Sequence Information
- Coding Sequence
- ATGGCAAACTGGAATAGGCCAAATTCATATGATAGTGGAAGAAACCCAAACTACAACTTCCAATCAAGCGAATATTCCAGACGAAATCCACAACAGTATGGAGGGGGGTCTACAACTCTACCTTATTACTCTGCTCCAAACGAAGTGGGTGTGTCTACCTCCGTACAGAATACTACTTTGTATGAAACTCCAGGAGCACCTGTTTTTAACGCACCTACAGATTATATAAATGCACATCAGACGTTTCCATATTTTAACGATACAGCTGACGTAAGTGCTAATCTTCCACAAAGGGAAGCAAATCTTGCTCTTGCAGCTTCATCATCTTTGACTGCAACAGCTGGAGAGTTTATACCAAGATCGACATCTGCGCTGCACTCAAGTTCTCGAAATGTTATGAAAAATTCTGTTTTACATGGTGGCCAAGATCAGCAACAATCAAGACAGCCTGACCAAGACTGGAGAAACAACCGGGTGTACAAAAATTCATTTACGGGCTATAATCGAGGCCAGGGTAACTCCGCAAGGGATGATCGAAACTCATCACAACCTAGGAGAACTAATATGGAAGATGCAAAGAGTCAAGATCGTAGCAGATTATTGGCTGAAGCTGCAGCGTTTCTTATACCCAAACCCAACCAGGCCGTGCCTGGATCTAGTGTCTCTAATGAAAATGCCGGGTCCGTTGATACCAAGTCTCAAAATGATGCCGGAGCTACAAACCCTATGGCGAGAAGGAATTTTGACTCCCAACAAAGATcaggagaaaataataaaagaatctATACCAACCctaaatatcaaaacaatacAACTTATGGTAACTATCCTAAATCTGAAAACTTCTATCAGAATCCTAGAAGAAACACTAATACTTCTGGCTACACGAAGCAACCACAGTATTACTTTCAGCAAGGAAATGATCCAAGAGAGAGAATGCCATTAACTCTAGAAACGTTTGGGGCGTCTCAGAGCTATGATGACGAGGCAAGTCAGAGGGAGCGCCTTGTTGAGCAGTTGACTAAAGGCACACTGGAATGCTTGGTATGCTGTGACCGAGTTCGCCAACAAGATCCTGTGTGGAGCTGCAGGAATTGCTACCACGTGTTGCACCTTAAGTGCATCAAGAAGTGGGCCAAGTCTTCCAAAGTTGAAACTGGATGGCGCTGCCCTGCCTGCCAGAATGTCACAGAGAAGGTCCCACAGCTGTATCACTGTTTCTGCAGCAAGGCGATTGAGCCCCAGTGGAATAGACAAGATGTCCCACACACTTGTGGTGAGATGTGTGGCAAGACTCGTGACAAGCCGGATTGTGTGCACCGTTGCACTCTTCTCTGCCATCCAGGACCATGCCCCCCTTGTGTTGCTCAAGTAAACAGACAATGCGGCTGCGGTGCAACATCAAAAGTGGTGAAGTGTGGTGGAGACAAGCCACTACTTTGTGACGCTCTGTGTGGCAAGGAGCTAAACTGTAGTGTGCACAAGTGTGCCAGGAAATGCCACATGGGAGAGTGTGGCAATTGTGAAGAAATTGTCAGCCAAGCATGCCATTGTGGCAAAGAGTCTCGGAAGATTGCCTGCGACCTCACCTCAGTCGGGGTGACAAACTTCTCCTGTGGAGGGATTTGTGAGAAGAATCTGACATGCGGGAACCACCAGTGCACTTTGGTGTGTCACACTGGCCCCTGTGGAGAGTGCGAGCTCTCCCCCGATAAGATCACACACTGCCCTTGCGGTAAAACCGAGCTTAACAGCAGACCAGGCCAGAAACAGCTGTCTGGATACCATTCCCAACTGTCCGCTCATCTGTGGCAAGAAGCTAGCTTGCGGTCAACCCAAAGGTTGTTGTTCAGGGTGGAGCTGTGCAACGAATGGCCATCAAGCTGTTTATCTGCTCTTTTTATTCACCCTAGTCGGCTAGGTCAGGAGGACTCGGCTCATTGCCGAGCGGACATGAAGAATGGGAGGGGGTGCTTGGCTAGCGACCTTAGAGCCTTGGGGGCTAAACTAAGAAGGGGAGAGAGGAGTAGAACGCGACACACAGTCTTGGGGATGCAAGAGCGTTACAGAGAAAGATAG
- Protein Sequence
- MANWNRPNSYDSGRNPNYNFQSSEYSRRNPQQYGGGSTTLPYYSAPNEVGVSTSVQNTTLYETPGAPVFNAPTDYINAHQTFPYFNDTADVSANLPQREANLALAASSSLTATAGEFIPRSTSALHSSSRNVMKNSVLHGGQDQQQSRQPDQDWRNNRVYKNSFTGYNRGQGNSARDDRNSSQPRRTNMEDAKSQDRSRLLAEAAAFLIPKPNQAVPGSSVSNENAGSVDTKSQNDAGATNPMARRNFDSQQRSGENNKRIYTNPKYQNNTTYGNYPKSENFYQNPRRNTNTSGYTKQPQYYFQQGNDPRERMPLTLETFGASQSYDDEASQRERLVEQLTKGTLECLVCCDRVRQQDPVWSCRNCYHVLHLKCIKKWAKSSKVETGWRCPACQNVTEKVPQLYHCFCSKAIEPQWNRQDVPHTCGEMCGKTRDKPDCVHRCTLLCHPGPCPPCVAQVNRQCGCGATSKVVKCGGDKPLLCDALCGKELNCSVHKCARKCHMGECGNCEEIVSQACHCGKESRKIACDLTSVGVTNFSCGGICEKNLTCGNHQCTLVCHTGPCGECELSPDKITHCPCGKTELNSRPGQKQLSGYHSQLSAHLWQEASLRSTQRLLFRVELCNEWPSSCLSALFIHPSRLGQEDSAHCRADMKNGRGCLASDLRALGAKLRRGERSRTRHTVLGMQERYRER*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -