Tdou039437.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Timema douglasi
Gene Symbol
chn
Assembly
GCA_901482245.1
Location
CABEEJ010005791.1:31294-41932[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 5.2 1.2e+03 2.5 0.2 1 9 133 141 133 143 0.88
2 10 0.02 4.7 10.1 1.7 1 23 198 220 198 220 0.97
3 10 0.0014 0.34 13.7 4.0 1 23 226 249 226 249 0.96
4 10 0.018 4.4 10.2 2.8 1 23 370 392 370 392 0.98
5 10 0.23 55 6.8 0.1 1 23 396 419 396 419 0.96
6 10 5 1.2e+03 2.6 0.5 3 23 424 444 423 445 0.85
7 10 0.0021 0.5 13.2 1.5 1 23 541 563 541 564 0.95
8 10 0.027 6.3 9.7 0.4 1 23 587 609 587 609 0.99
9 10 0.97 2.3e+02 4.8 1.6 2 23 630 651 629 652 0.93
10 10 0.027 6.5 9.7 2.4 1 23 783 806 783 806 0.92

Sequence Information

Coding Sequence
ATGGAGGCACCCCTTGCCATGGACTGCTACGAGGACATGTTCAAGGAGATCACCAGGAAACTGTACGGCGAGGACGACAACATGAACAGTAACCCTCGCTCCATCACAGCCGAGTATGACCACACTACGGGCGGGTTTAAGTCAGAAGATGGGGGAGCACTGGCAGCGTTCGGTTTAGCTGCCCTCATGCAGAATGGCTTCCCCCCACCACCCCCACCTCATGCCCACCCCCAAGACCGATGGGTTTGCAGCGAGGAGAATTTGCCGTGGACCACTTCCAAGGTGGCGAGCTACAACCCGGTTCAGCGGGTGTTCCGCTGTGCGGAGTGTGACAGTGTAGGATCCCTGGCAAGAGTGGCAGAACATTGGCTGGGAGCCCACGCCAACCTTCGTGTCTTCCAGTGTCCGCAGTGCCCATACTCCAGCGCATGGGCACGGTGCGAGGTCTCCAAGTTCCTGCACCGACTGAGGGCTCGAGCGGAGTCGGGACCACCACCCCCGCCAGCACCTTCGGCCCCGcctccaccaccaccaccaccaccaccaccacccacAGCACCCAAGCAAGAAAACAGTGGTGGGGTCAAGCGCTACTGCTGCGGGTTCTGCCCTTACGCCACAGATCGAAGGGACCTCTTCACTAGGCATGAGAACATCCATCGCGCAGAGAAACCTTTCCAGTGCTATGTGTGTCAGAAGCAATTCAACCGGGCAGACCATGTCAAGAAACACTTCCTTCGTATGCATCGCGACTACCCTTACGACCTAAACCGCATACGGCGGCAACCACCCAAGAATGCGAGCGGAATGTCGTATTACCACAAGTACAACAACAACACTACTTCCTCCTCTTCAGGGACCAACAACTCCAACAATGGCAACAGCAATAATGGCGGTAGACCTCAAGATAACCACCACATGCTGTCCATGCCACATCCACCGCCAATCCATCAGGGTCATCTGCACCCAGGCCTCAATATCCCTGGTGGGTTCCCCCCCATGGGGATACGGTCGGGCAGCAATGGGGTTGGCAAGCAGAAGTCTTCTCATGGCGGGTGTAACGCCAAGTCCCATGGTGGCAAGATGAAGAAAAAAGGAGAAAAGCGCTACTCTTGCTGCTACTGCGCCTGGTCAGGGGTGGACAACTGGTGCCTCAAAAGGCACCTCAATACACACCTCAAGCCATTTGTTTGTGTACTGTGTGACTACAAGGCTGCACGTTCTGAGCGCCTGGCTACACATGTTCTCAAGGTCCACAACAAGCGTTCATGTGGCCGATGCTCCTTCCTGGCCGATGATCAGGCGCAGCTGACCATACACCTGCAAGAACACCATCCATTGGAACATAGAAACAATCGTTCTTCCAACAATGTCCTGCGTAATGTTGGCTTCTCAAACCATCCACCTCCTGGGCCCACGCCTTTTGGGTACCAGACCTCCGACATGGTGAAGAGGGAGCACATGGACACAAATTTGGGGGGCCCCTTGTATGGGGCTGAAGGGGTTCATTGCCCTCGAAGGCAACACTGGGGAGCAGCACGGCTGTTCCACTACATGGAGGCCTCTGACGCGTCTGATGAAGGGGAGGAAATGGAGCAGGAGGAAGTAGAACTACCAGAGTTTGTATGCCGCGATTGCGGATGCGAGTTTGTGGATGACGCGTCGTTAGAGACTCACAACATGACGCACCACCGCGTGAGTTCGTCAGCCGAGGAGAGAGCTGCGACTACTTGCGACAGTTCAAGCAATCATTGTGCATATCAGTGCAGTGTTTGTGGCCATGGTATGGGTTCTCAAACTGCCATGATGGATCACATGAAGTCTCACTCAAGCATATGCAATGAGGCAAGAGCAGGTCAAGAAACTCACCGAGACACCAACCTACTGCGTTGTCCACACTGCAGCATTGATTTAGTTACATATGAAGATATTAGACAGCATCGTGAACAACACCACAACTTAGAAACTTGTGTTAACTGTGATAATATGGCCAGAAAGCACTATGCAGACAGTATAATGGATTCCAATATGAACCATCAAAAAGTCGGGGATCAAAACATCAATGACAGTGTTTCTGCCTCCAAGCGGTCTCGGAAACAAAGTCAGCCAAGGAAGGTCGTTCCAGATATCCTTGATTGTATGGAGATAAGAGTCCATCGCTCAAGGCTGGCCAGAGGGAGGAGTGAATCCGCTATGTTTTCAACTCTCGCTGAAAAGTACTCTGAAATACTCCTTACGAGGCGGTGTTTGAAGTGTGCTTGGTGTCGGCAGGAATACTTGACGTTTCCATATCACACGCCGGCCAGCCTGGCCTTCCACCATTTGTGGAGGCATGCAAGACCCAAGTTCCCATGTGAACACTGTGAGGCTAGTTTTAGACACCGCTACCAGGTGGTGTTGCATTCCAGTCGAGAACATGTCAGACCAATAACTACAGTGCCTGAATCTAACGAGGAACCAATTATTCTCTCTAATACACCTGTACCTGCACAAATAGAACCTTCTCTTTCAAAAGTAAACGTACCTGATTTATTACTCCACACGGACAAGCCTATACACACACCTCCCCTCAAAGTGCCATCTCTTCTCGACCCGTCTCTTTTGCACGAGTCGAATAGAACTTTATTGACACCTTTACCTCCATCTTTGTCCTCCTCTTCTCCTACGTGA
Protein Sequence
MEAPLAMDCYEDMFKEITRKLYGEDDNMNSNPRSITAEYDHTTGGFKSEDGGALAAFGLAALMQNGFPPPPPPHAHPQDRWVCSEENLPWTTSKVASYNPVQRVFRCAECDSVGSLARVAEHWLGAHANLRVFQCPQCPYSSAWARCEVSKFLHRLRARAESGPPPPPAPSAPPPPPPPPPPPPTAPKQENSGGVKRYCCGFCPYATDRRDLFTRHENIHRAEKPFQCYVCQKQFNRADHVKKHFLRMHRDYPYDLNRIRRQPPKNASGMSYYHKYNNNTTSSSSGTNNSNNGNSNNGGRPQDNHHMLSMPHPPPIHQGHLHPGLNIPGGFPPMGIRSGSNGVGKQKSSHGGCNAKSHGGKMKKKGEKRYSCCYCAWSGVDNWCLKRHLNTHLKPFVCVLCDYKAARSERLATHVLKVHNKRSCGRCSFLADDQAQLTIHLQEHHPLEHRNNRSSNNVLRNVGFSNHPPPGPTPFGYQTSDMVKREHMDTNLGGPLYGAEGVHCPRRQHWGAARLFHYMEASDASDEGEEMEQEEVELPEFVCRDCGCEFVDDASLETHNMTHHRVSSSAEERAATTCDSSSNHCAYQCSVCGHGMGSQTAMMDHMKSHSSICNEARAGQETHRDTNLLRCPHCSIDLVTYEDIRQHREQHHNLETCVNCDNMARKHYADSIMDSNMNHQKVGDQNINDSVSASKRSRKQSQPRKVVPDILDCMEIRVHRSRLARGRSESAMFSTLAEKYSEILLTRRCLKCAWCRQEYLTFPYHTPASLAFHHLWRHARPKFPCEHCEASFRHRYQVVLHSSREHVRPITTVPESNEEPIILSNTPVPAQIEPSLSKVNVPDLLLHTDKPIHTPPLKVPSLLDPSLLHESNRTLLTPLPPSLSSSSPT*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01446121;
90% Identity
iTF_01446121; iTF_01449097; iTF_01448045;
80% Identity
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