Basic Information

Insect: Timema douglasi
Gene Symbol: -
Assembly: GCA_901482245.1
Location: CABEEJ010001824.1:83588-96483[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 1.5 3.6e+02 4.2 0.0 2 23 377 399 376 399 0.88

2 15 0.00013 0.031 17.0 0.1 1 23 562 585 562 585 0.92

3 15 0.047 11 8.9 0.1 3 23 679 700 677 700 0.94

4 15 0.79 1.9e+02 5.1 1.9 3 23 715 735 714 735 0.95

5 15 0.00026 0.062 16.0 0.3 1 23 764 786 764 786 0.97

6 15 6 1.4e+03 2.3 2.6 3 23 808 826 806 826 0.78

7 15 0.38 90 6.1 0.3 3 20 836 852 835 854 0.91

8 15 0.21 51 6.9 0.3 3 23 866 887 865 887 0.93

9 15 0.0014 0.34 13.7 5.2 1 23 893 915 893 915 0.98

10 15 0.0021 0.49 13.2 5.1 1 23 921 943 921 943 0.96

11 15 0.00013 0.03 17.0 1.3 1 23 951 973 951 973 0.97

12 15 0.0017 0.42 13.4 0.3 1 23 979 1001 979 1001 0.97

13 15 0.062 15 8.6 4.7 1 23 1007 1029 1007 1029 0.87

14 15 0.089 21 8.1 7.5 1 23 1033 1055 1033 1055 0.98

15 15 0.0021 0.5 13.2 0.6 1 21 1059 1079 1059 1080 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	1.5	3.6e+02	4.2	0.0	2	23	377	399	376	399	0.88
2	15	0.00013	0.031	17.0	0.1	1	23	562	585	562	585	0.92
3	15	0.047	11	8.9	0.1	3	23	679	700	677	700	0.94
4	15	0.79	1.9e+02	5.1	1.9	3	23	715	735	714	735	0.95
5	15	0.00026	0.062	16.0	0.3	1	23	764	786	764	786	0.97
6	15	6	1.4e+03	2.3	2.6	3	23	808	826	806	826	0.78
7	15	0.38	90	6.1	0.3	3	20	836	852	835	854	0.91
8	15	0.21	51	6.9	0.3	3	23	866	887	865	887	0.93
9	15	0.0014	0.34	13.7	5.2	1	23	893	915	893	915	0.98
10	15	0.0021	0.49	13.2	5.1	1	23	921	943	921	943	0.96
11	15	0.00013	0.03	17.0	1.3	1	23	951	973	951	973	0.97
12	15	0.0017	0.42	13.4	0.3	1	23	979	1001	979	1001	0.97
13	15	0.062	15	8.6	4.7	1	23	1007	1029	1007	1029	0.87
14	15	0.089	21	8.1	7.5	1	23	1033	1055	1033	1055	0.98
15	15	0.0021	0.5	13.2	0.6	1	21	1059	1079	1059	1080	0.95

Sequence Information

Coding Sequence: ATGGTCGCCGCAGATTGTCCTTTGTGCTGCAAACAGAAGCTCTCGTATATCGGGCTCAAGAAACATTTAGCAGGCTACATCTGGGGCAGCATTCCCTGTTCCATATGTGATTCCATTTGTGTAGGGATAGAGAGTCTTTACACACATCTAGACGATTGCCACCAGGAACTGAATATCTCAGAACTAACCGAATCACTTTCAACTGAAGATGAAACTGAAAGTAAGTTTTCTCAATCTCGTTCTACCTCTAACAGTGTTCTAGAAGTGTCCGATGAGATGACCGAGTCGCTCGAACCTTTATTAACGAGAGATAAATGTGACGCCAGTGGAACTAACGATAGCAGTGGCCGCGTTTCAATGGAAATGGGAGGGAATCGTGTGGATGATACACTTACCGGCACAGGTACCTCAAGAGAAGCGCAACAGGTCGCGGGAAAGAGACACTCTAAAGTTAAAAGAGTGGACGCGGAACTTATCGAACAGATAAGAGCCAAGAAAGAAAGTGTCTCGAATATTTATGCGGATATAACCCAAGAAACGATTACGTTTGAGTCGGTATCGGATACAGAATCCATGTTAATAAACGATGGTGGGACCAGTGAAACCGAATACTGTGCCAGTGCGATGGATACTCTACTTTATATAAAGAATGAGACTCGACCAAGACATATTACAGACGCTAAACCGAACCGCGGTACGGCCGTGACGAAACCCGAGGTATTGGGTCGTCTGGTGAAATGTGCGGGTGCGGGAAAACCACCCATGGTACATCTGGCTGGTATACGAACCCTGACCTGCATCACCAATAAACCAGAACAGACACAGACACTCCATGGTCAGTTTGCCCACCAATGCagAGCGAAACATGGGTCCATCCCAACTCTACATCTTCCCGACAAGACCATCCGACGAAGTCTAAGGGATAGAAAACAGATGAATACCAGCAATGACTGCGGGTCAATCTCCTCTCGACCGATGGTCGCGAAAGCTACGTCTGGTACCTGTGTTCCTCAACAATGTCAAGAACCCGCACTTAAAAGTGGTTTGGAATGTCCCCTGTGCTGCAAACATCAGCTCTCATTCGAGGAATTAAAGAAACACTTGTCGATATATATCTGGGGGTTCCTGCAGTGTCCGGTGTGTGGGGAACTGTTGATCGGGCTGGAGAAGCTCGCCCAACACCTCGACAACCGTCACTGTGAGACTGGTGACCAGATATCGACAACGAGCAAGGGTCTCTGTGACAATGAAGCGTTGGAGAAGAGTTCCGACTCGATTAGTTCACACAGCGCAGCCAGCTCAATAGGGCGTAGCATACCAAATAGTATTAAATTAGAAGAAGATGACATAAACGACACTCTACAAGACGTAAACAGTTCTATTCATAAATTCAGAAACGATGCTAATACTGTGTTTGGGAAGGTGGAAATTCCTGATAATACGGATCCTCTTATCACCGAAGATATTAACTCCTCGCGGATTTTTTGCAAATCTGATACGACtataataaaagataaagtATCAAACTTGTTGAACAATCTAAGTGAACCCTTATATAATAACACTCACATAAATTCAGTTGGGCAGAAAAACTGTCGAACGCAGGCAAATTCCATCAAGATCATTAATAGTAGTACTACAATCGACGTGAAAGGCACTGcaccaaataatataaacactggCTATATGTGTGAATACTGTGACATAGTGTTTGTGTCCTTAGATAACTTGCAAGAGCACGCAACGAATGCTCACAATATGAACAATATCGTTGTTAATGTTTCGAAAGAGCTGTTTCCTGAAGTTCTGCCGTCTAGCAAAAGGAAAGTGGTGAAGATTCACGGTCAAACGATAACTCTACAACCAGATTTATTGTCAGACTCGGACATGAAACAAACCTCACCCGATGGTCAAGCGTCTGACAAGAAGAAAACTCAGGAAAAGATGTGTCATATCTGTGGTGGGACGTCTCGCCGCAATTTTCCGTCCAAGCGGCAGATGTACGTGGACAAAGAGTCGGACCAGAGGGTTATATGTAGCGTGTGTGTGGCTTGTTTCGAAGACGAGGATCTCTTAGCTAGGCATGGTAGGGAAATGCACGCAGGACTTGAAGTTTTCAGACCCCACCTGAGGAATAAGATTTGCCAACTCTGCGGGAAAGTTTTATTTACGCACAACATTTCCCGCCACATGAAAAGTTCTCATGGCATAGACGGGGCGGTCCGCTCAATTTGTCAAGATTGTGGCAAAGTTAACTGCTCTGAAACGCTACACAAGACTGATTTAAGTTATACGTGCAAGGTATGCGGTGAAAACTTTTCGACTGTAGTCGCCCTGCGTTCACACTCGTCCTCTCATATTGAAATCTCAAACGAGAATGAAGTCTTCGGAGAAACTTTGCCGAGACAGAAAGTCTCTGTTTGTAAAATATGCGGTGAAGCGCGGTCTAACATGAGAAAGCACATGGTGACATGTCACAAGGAAATGTCGCAAGAATCTGTCGCTTGCCCGGACTGCGACGAGATATGTAGCAAGAACAAGTTGAAGGCTCACAGGGCAGAGTGTCCCAAGAAAGAATCCGACGAAGCCGTGGCATGTCCGGACTGCGGTAAGATGTGGGGCAATAAAAAGAAGATGAAGCTACACAGAGATCGCGTCCACCTCCGGATATTGCGTTTCGTTTGCCACGAGTGCGGCAAGAAATTCTTCTGTAAGAGCGGGCTCAACACGCATCTGCTGACGCACTCAAAGGTGAAGAAACACGAGTGCAAGTTTTGCAGCAAACGTTTCTCTTCGAAAACCAACTTGGACACCCACGAGTCTAAACACTTGGGGAAGAAGGAGAGTCCGTTTATTTGTAGCTATTGCGGGCGCTTGTTCACTAACAAGCTATATCTACAGAACCATGAACGGCTCCATAAGGGTGAGCGTCCCTACGCCTGCAAGATCTGCGGCGCCAAGTTTGCCGGGCTGTCGACTCTGTACAGTCACAAGTACACGCACACGGACGAAAGGCCGCATCACTGCAACATGTGCGGGAAATCGTTCAAGACGACGGCCGCCTTGTACTTCCACAAGCAGCAGCATTCGAAACAACACAAGTGTGACGTCTGCTGCCGAATGTTCAGCTATGTGCACAACCTGAAGCAGCATCTACTAACTCATACTAAAGACTACAGTTGCTCGGGGTGCGGCGCGCAATTcaagtcattaaaaaaactgcaagtTCATGAAAGACACGGATGTAGGCCTGGTTAG
Protein Sequence: MVAADCPLCCKQKLSYIGLKKHLAGYIWGSIPCSICDSICVGIESLYTHLDDCHQELNISELTESLSTEDETESKFSQSRSTSNSVLEVSDEMTESLEPLLTRDKCDASGTNDSSGRVSMEMGGNRVDDTLTGTGTSREAQQVAGKRHSKVKRVDAELIEQIRAKKESVSNIYADITQETITFESVSDTESMLINDGGTSETEYCASAMDTLLYIKNETRPRHITDAKPNRGTAVTKPEVLGRLVKCAGAGKPPMVHLAGIRTLTCITNKPEQTQTLHGQFAHQCRAKHGSIPTLHLPDKTIRRSLRDRKQMNTSNDCGSISSRPMVAKATSGTCVPQQCQEPALKSGLECPLCCKHQLSFEELKKHLSIYIWGFLQCPVCGELLIGLEKLAQHLDNRHCETGDQISTTSKGLCDNEALEKSSDSISSHSAASSIGRSIPNSIKLEEDDINDTLQDVNSSIHKFRNDANTVFGKVEIPDNTDPLITEDINSSRIFCKSDTTIIKDKVSNLLNNLSEPLYNNTHINSVGQKNCRTQANSIKIINSSTTIDVKGTAPNNINTGYMCEYCDIVFVSLDNLQEHATNAHNMNNIVVNVSKELFPEVLPSSKRKVVKIHGQTITLQPDLLSDSDMKQTSPDGQASDKKKTQEKMCHICGGTSRRNFPSKRQMYVDKESDQRVICSVCVACFEDEDLLARHGREMHAGLEVFRPHLRNKICQLCGKVLFTHNISRHMKSSHGIDGAVRSICQDCGKVNCSETLHKTDLSYTCKVCGENFSTVVALRSHSSSHIEISNENEVFGETLPRQKVSVCKICGEARSNMRKHMVTCHKEMSQESVACPDCDEICSKNKLKAHRAECPKKESDEAVACPDCGKMWGNKKKMKLHRDRVHLRILRFVCHECGKKFFCKSGLNTHLLTHSKVKKHECKFCSKRFSSKTNLDTHESKHLGKKESPFICSYCGRLFTNKLYLQNHERLHKGERPYACKICGAKFAGLSTLYSHKYTHTDERPHHCNMCGKSFKTTAALYFHKQQHSKQHKCDVCCRMFSYVHNLKQHLLTHTKDYSCSGCGAQFKSLKKLQVHERHGCRPG*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -