Tdou000763.1
Basic Information
- Insect
- Timema douglasi
- Gene Symbol
- -
- Assembly
- GCA_901482245.1
- Location
- CABEEJ010000024.1:484385-500545[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 4.1 9.7e+02 2.8 0.2 2 23 136 158 135 158 0.92 2 14 6.8 1.6e+03 2.1 1.4 3 23 163 184 161 184 0.89 3 14 0.24 57 6.7 0.5 2 23 188 210 187 210 0.94 4 14 0.015 3.5 10.5 0.3 5 23 608 627 603 627 0.87 5 14 0.0029 0.68 12.8 3.5 1 23 705 728 705 728 0.98 6 14 1.3 3.1e+02 4.4 2.3 1 23 739 762 739 762 0.92 7 14 0.019 4.5 10.2 3.3 1 23 768 791 768 791 0.93 8 14 0.84 2e+02 5.0 1.3 2 23 798 820 798 820 0.94 9 14 0.0016 0.38 13.5 2.4 1 23 828 851 828 851 0.97 10 14 0.00044 0.1 15.3 1.2 1 23 857 879 857 879 0.96 11 14 4.2e-06 0.00099 21.7 0.4 2 23 886 907 885 907 0.97 12 14 7.3e-08 1.7e-05 27.2 2.5 1 23 912 934 912 934 0.98 13 14 0.00022 0.052 16.3 4.8 1 23 940 962 940 962 0.99 14 14 1.4e-05 0.0033 20.0 1.9 2 23 969 990 968 990 0.97
Sequence Information
- Coding Sequence
- ATGAGTCAAAGTGAGGGAAATGATTCCAGCTTGGAGCGGGCACGCTTCCCACTCTATCATCACtcaaagaaaattaagaaaaaaggtGAAAAGTCTAGCATGAGACGGCATTTGAGTGATAATAAGATGGAGATTGAAGAGGAAGTATCTAAAGGAGGGGGGAGTGACACAGATGGCAACGTCCCTGCGGCCTCTGACCTTCCTTTGTGTGTCCCACATTTGTTGGCCCCGGCCCCTATCCCTTGTCAATCAGTTATAACCAAGGCGTGGTCATCTCCCACTCCTGCATCATCTCTTCAAATTAGTGGCCCATCGGGTATCATGCCTAGTATTTCCAGCCGCAAGGAGGTCCAAGCTCTTCCTAAAAGAAATGAATACACATCAGCTTCTATACCAAAAACTGTTGTATGTTTCATTTGCAAGGAATGGTTTTTTTCTAGAGAAAAGTTCATAATTCACTTGGTGATGAACCACAGAATGGTGCATTGCCGGCACTGTCAGGAGATTTTTGAAACTGATGATATGCGTATTCTTCACGAAAGAGAATTACATTTCCCTTTAGAATGTGATATATGTAAGTGCACAGTTGAATCAACTAAAGAACTGGCAGAACATTATGAGAGGGATCATGATGTACGTACATGCTTGTTTTGTGGAGTTTTAGTGAAACCCAAATCATATTACAGTGTACATCTTggtaaaaaacattttgttagcTCTGAAGATGCTTTGAGTGTCGATAAAGTGAGTTTAGTTAAACATTGGAATGACGCGGGTGGCTCTGCATGGACATTTAATTGCTATTTGTGTGGCAAAGAACGAAAAAAGGTAGAAACTTTTGGACACTTCTTTTCTTATCATCGTTTTTCCTTAGTTTGTCTCCTGGAGCAGTTTGCTTCTgaacatataaattttattgttcaagGAAGCCCAGCACCACCATCACTTAATTGTGAAACTATACATGTTGACACTAACTCATTTGAAGAGGCTACTAAATTTGCTGAAACACTCAACTCAGCAAAAAGTAAAAAGGAAGATTCCAACTTTGGAGATCACATTGATGGATCTGAAAAATTCAACTCTGATTCTTCATTTGAGCCTTCTTCAGATGAGTTTATGGTTGGCTCTGGAGGAGAGAATGAAGAATCTGAcgaagaagaagaatggaaaccAGATGTAATAGCAAATTTAAACGAAGAACCAATTGAGGCACAAATAGATCCAACAGAAGTAGAATGTGTAATGAATGACACTAGTGATGATGAATTTTATGACGATACCTCACCTATACAGGCAGATAGTGAAGGAAGTGataatttcatttctaataTGCAGataaatcaagaaaaaataGAGGCCATGATTGACAGCTTGAACACTGGTCTTGATGAGGAAAGTCATGAAAAGACTGCAGAGACGAGCACAGAAAATTTAAGAAAGATAGCAACACTATCCTCAGGGGAAAGCCAGCCCTTAACACTAGACACAGACACTGTTGAAGATCAGATAGAAAAGATGTTTCAGACCCCTTCCAAAACCACAGAACAGCTCGCCGAACCTGCTACTTCCAATGGGAAAGTTGCCAGTCGGGAAAGCTGGGAGGCCGCAGATGTTCTAATGGCTATCAAGCAAGAACCAGGAACTGATGTGGATGGTAACTTTCCATTCCCAAGCCAAAAGAAAAATCgtaaagaaatgttttgtgaAATTTGCTGTGGTCCATGTCCAGGGCTAGAAGAATTATTGCAGCACTTAAATACTGTCCATAATTTTTCTATCATGGCTCTGGGTGGTGAAAGTAGATTCACTTGTATAGAGGagtgtgataaaatatttaattctcaGGCCTTGCTGgacaaacataaaaaagaagTGCATAATATTACCAAAGTGACGACAACGTTCCAATGTCCGTTCTGTGCTGTTCAAGCAGAGACGAAAATCACTGTGAGACAGCACATTTTTGACTTTCACAACAATGATTTGATGTCAGAGCCTCCACAGAGACCGTTTGCTTTCCCATGTCGATGTTGTTCAAAAAAGTTCTGGCATGTTGAAGAAAGAAATCAACATCAAATGGATGAGCATTCTGACACTATTGAAAGTTTCTTCAAGTGCTATATATGCCTTCAATCATATACAAGCAAGGTATGTTTGAATCGTCATGTCTTGACAACACATCCTGGTGAACAGCGCTACTCTCCTCTCTCGTACAAGTGCAAGCTGTGTCTTGTCATGTTTCCCACCGTGGCCAAGATGTGCAAACATTTCCAGGACTCACACCCTGCCGCTCTCGTCTTCCTTTGCCGCTTCTGCAACATGActctcaaaacaaaaaaaactctcaaGACTCACATTAAGAACATGCACTCACAGGCTCGCCAACGTGAGTGCCATCTTTGCGGCAAAATGCTATTGAGTAAACGAGCGTATGCGATACATTTCCGCATGAAGCACAGTGCAATCTCCAGAGTAGGCTTCCGCTGCCGTATCTGTCAAAAGAGATTTGACTCTAAGGATGAGAGGAAGCTGCACTATCAAATGGACCATGAAGGTGAAAGCCCATATCACTGCACAGACTGTGGTAAAGGCTTTGCCTCCAAGTCAGGCATGTATGGGCACAGGCAGCTGCATACAGGAACTGGCGTGTCAACATGTGGTTACTGCGGAAAGGCTTTCACACGCAAGGACAGCTACAATGAACACTTATTGATCCACAATGGGCCACGGCACAAGTGCCCTCATTGTCCTAAAGAATTTGTGCAACGCTCTAATTTGGTGCGACACATTCGTATCCACACAGgtgaAAAACCTTATAAATGCTTGTATTGTGACAAGTGTTTTTCTGACAAAGGGGCATGCAACTCACATATCCGTGTTCACACCCGTGAGGAAACGTCTTCTTGTCCTTATTGTGGTCAAACCTATTCCAAAAAACAGAAATTGAAGTACCATATTCGTAAACACACAGGAGAAGGATTAATCACCTGTGAAATTTGCAACAAGGTAAATTATGTTCACGTTCAATAA
- Protein Sequence
- MSQSEGNDSSLERARFPLYHHSKKIKKKGEKSSMRRHLSDNKMEIEEEVSKGGGSDTDGNVPAASDLPLCVPHLLAPAPIPCQSVITKAWSSPTPASSLQISGPSGIMPSISSRKEVQALPKRNEYTSASIPKTVVCFICKEWFFSREKFIIHLVMNHRMVHCRHCQEIFETDDMRILHERELHFPLECDICKCTVESTKELAEHYERDHDVRTCLFCGVLVKPKSYYSVHLGKKHFVSSEDALSVDKVSLVKHWNDAGGSAWTFNCYLCGKERKKVETFGHFFSYHRFSLVCLLEQFASEHINFIVQGSPAPPSLNCETIHVDTNSFEEATKFAETLNSAKSKKEDSNFGDHIDGSEKFNSDSSFEPSSDEFMVGSGGENEESDEEEEWKPDVIANLNEEPIEAQIDPTEVECVMNDTSDDEFYDDTSPIQADSEGSDNFISNMQINQEKIEAMIDSLNTGLDEESHEKTAETSTENLRKIATLSSGESQPLTLDTDTVEDQIEKMFQTPSKTTEQLAEPATSNGKVASRESWEAADVLMAIKQEPGTDVDGNFPFPSQKKNRKEMFCEICCGPCPGLEELLQHLNTVHNFSIMALGGESRFTCIEECDKIFNSQALLDKHKKEVHNITKVTTTFQCPFCAVQAETKITVRQHIFDFHNNDLMSEPPQRPFAFPCRCCSKKFWHVEERNQHQMDEHSDTIESFFKCYICLQSYTSKVCLNRHVLTTHPGEQRYSPLSYKCKLCLVMFPTVAKMCKHFQDSHPAALVFLCRFCNMTLKTKKTLKTHIKNMHSQARQRECHLCGKMLLSKRAYAIHFRMKHSAISRVGFRCRICQKRFDSKDERKLHYQMDHEGESPYHCTDCGKGFASKSGMYGHRQLHTGTGVSTCGYCGKAFTRKDSYNEHLLIHNGPRHKCPHCPKEFVQRSNLVRHIRIHTGEKPYKCLYCDKCFSDKGACNSHIRVHTREETSSCPYCGQTYSKKQKLKYHIRKHTGEGLITCEICNKVNYVHVQ*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -