Tdou020947.1
Basic Information
- Insect
- Timema douglasi
- Gene Symbol
- -
- Assembly
- GCA_901482245.1
- Location
- CABEEJ010001865.1:25681-39600[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0013 0.31 13.8 0.3 1 20 197 216 197 218 0.94 2 11 0.0038 0.89 12.4 0.3 1 23 232 255 232 255 0.90 3 11 1.5 3.5e+02 4.2 3.5 2 22 289 309 288 309 0.92 4 11 0.29 69 6.4 0.9 1 21 340 360 340 361 0.92 5 11 0.0095 2.3 11.1 1.3 1 23 367 390 367 390 0.98 6 11 0.072 17 8.4 5.1 1 23 396 419 396 419 0.90 7 11 0.0051 1.2 12.0 0.6 1 23 426 449 426 449 0.90 8 11 0.00014 0.033 16.9 0.7 1 23 455 477 455 477 0.95 9 11 2e-05 0.0048 19.5 5.6 1 23 483 505 483 505 0.98 10 11 0.00017 0.04 16.6 2.2 3 23 513 533 511 533 0.95 11 11 0.00024 0.058 16.1 1.1 1 23 539 562 539 562 0.98
Sequence Information
- Coding Sequence
- atggatgtttattcttgtttacttaaaaatacctttatgAATCTGGAGCTGTTTTTGCAAAAGGTGGCTGCTTTGGATATTTTTGAAGCATTAATCTTCAAATACAAACTCAAAAGTGGTTTGTTGGATCACATTGCTGTCCATTTCTTGCCCATAGTCTCAGAATTCATCAACCAATTGCAGACTCTTTCGCGCacattttatgaacataattcACTTGAGGGGGAACCTTTAAAGAATTATGCTCCAAAAGAACTAGCATTTGACGCTTTGACATTGGACAATGAGAACGGATCGAACAAAGAATCACAAGATGGGAATTTATCAGTTCCGCCGCTCagtaaagttttcaaaaaatgtgagGGCTCGGAAGTATCGCACTATAAACATACAAAGAGGAAAGAGACCACGAGAAGGTGCTTGAAAAAAAACTGTGTCGCCGCGGTACATTTTGGTGGGAGCTGTATTTGTCCCGGTTCCCAAGACAAAGATAAAAAGGAGAGAAGAAATTCTAAGACTGAAAAGGAAGCTCACAACGATGTGAAACTAGACGCTAACAACAGCCAACCGGGCCGCAGcataaaatcattcacttgtgaATTGTGTAAAAGGGTGTTTCCTTCTTCGACCAAACTGTCTGCTCACGTGTCGAAATGCTGCGGGGACACTCAACCTTCCAAACTCCCTGAAGTCTTCCTATGCAACGAGTGCAACTTGGCATTCTTCAGTCAGAACAATCTTTGGGAACATAAAGAACAGGCACACTCATGCAATGCCACCAGCGCTACCTCTGCAGATGTGAGCCTTCAGGTGATGGAAACTTTAGCAGAAGAGAGGATTCTTTTGGAGAACTTGCCTTTCCTCTGCTGCCGAACTTGTCAGCTAGTTTACAAGACCCTGGCCGAGTTCCACGTACATATCTGCACGCGCCTCACTAATGTTACAGACTGCAACTACCTTGACCTGATTGGCCGTCAGCTGATAACTAGCACCGAGCAATTGAAAGCACTCAAGAAGTACAAGTGTGGAGTGTGCCAGGAGGAATATCGCAGCCACAGTCGCATGCTGTACCACTTGTCTCGATGCAGGCGCGGCCCGTACAAGTGCGAGCTTTGCCAGGAACAGTTTGACATCAAGAAAGCTCTCAACTTGCACAAGAAGAAGAGTCACAGGGGggttaaatgtttcttttgtgACGAGTGTAGCCTTTCCTTCAAGTTCTGTACATCCCTTCAGAAGCACAAAGTGAATCGTCACGAGAAAGAACAGGGTACTTTCCTGTGTGAGCAATGTGATAGTGTTTTCACAAAGAAAATTCAGCTGACAAATCACAAGATACAGGCGCATCAAGtcgaaagaaaatttttatGTCAGGTGTGTGGTAAGAAACTGAGCAACTCTAATAGCCTAAACACTCACTTGGACACTCACTCGGAGATGAGAAAGTTTTCCTGCTCTTTCTGTAACAAGACTTTCAGGCAGAAGGAGAAGCTCAAATATCACACAAGGACACACACAGGGGAGCGGCCACACCTGTGCCAGACGTGTGGCAAGAGTTTTATCCGCAAGTCTCGGCTGGACGATCATATCCTGCGACACCAGGGCAAGAAGCGTTATCGCTGCGGCCACTGCAGTAAGTCGTACGCAGGTGCCTGGGACCTCAAGCAACATGTCAAGAAGCAACACCCAACTGTCGAGGAAATGTCTCCGACCAAACCTGAGCGTAAGAAAACTCCTGGAAGCGCTTTGGGAACAGCGAATGATGACAGCAATAACCCTGATGATCCAGTGGCCATTATAGATGAAGAGGACGAGGAGGATGAAGACGGAGGCTCACACTCTGAGGAAGAATGCGCAGACGGACAACCGGGGATACTCTCCGTCCCCCATATAAGTGTCGACCCCAAACAAACCGAAAATCAACTTGCTTCCCATCCACTTCTTAGTCAAGTAGTTGTTCAAAGTGGTACGAATGCTGCGGAAAACAATGAAATTTTGTTACACCTGAACCCCGTTACCTCTGTTCTCCAAAACAGCACTCCGAGCTCTTTAAACCAGCCCAAAATTTTGCTACATTTAGACTCATTACAATTACAGAGTCCATCTTTATATCTTCGTAAAAACTCAAACGACTTCGGTTCTAAGTTTTTACTTCAGCTGAACAATTCTTCCGAACAGCAGAATCAATCTTTAGTTGGAACTACGAACAATAGTGATAGTAATTCAAGGATCTTAATCCAGCTGGACCCAAGACATTCACAGTCTGAATCGTTGTCGGCTAGCGGTGGCGCTTCAACCAACAGCAACTCAAAGATTTTGCTACAATTAAACCCTGTAGCACAACAGTCTCAAACCCAGGCCATCTCGACGAATACCATCTTAACGTTGGCCGATACTATCCACTTGGTCGACGATGTGAATCTTGGTGGATTGATGACGCAATATATCCAGCTGGCAACAGCACAAACAGAGACTACAAGAACAGGGGATTTGCCGGTTATTCAGCTCCCGACACAAAGTTCCTCTGCCGCCACCTATCAGCTGCAGGGGCAACCAGGACAGATCTTTACTGTTTCGGGCTTTGAGGTCCCCACAATAACACTTTAG
- Protein Sequence
- MDVYSCLLKNTFMNLELFLQKVAALDIFEALIFKYKLKSGLLDHIAVHFLPIVSEFINQLQTLSRTFYEHNSLEGEPLKNYAPKELAFDALTLDNENGSNKESQDGNLSVPPLSKVFKKCEGSEVSHYKHTKRKETTRRCLKKNCVAAVHFGGSCICPGSQDKDKKERRNSKTEKEAHNDVKLDANNSQPGRSIKSFTCELCKRVFPSSTKLSAHVSKCCGDTQPSKLPEVFLCNECNLAFFSQNNLWEHKEQAHSCNATSATSADVSLQVMETLAEERILLENLPFLCCRTCQLVYKTLAEFHVHICTRLTNVTDCNYLDLIGRQLITSTEQLKALKKYKCGVCQEEYRSHSRMLYHLSRCRRGPYKCELCQEQFDIKKALNLHKKKSHRGVKCFFCDECSLSFKFCTSLQKHKVNRHEKEQGTFLCEQCDSVFTKKIQLTNHKIQAHQVERKFLCQVCGKKLSNSNSLNTHLDTHSEMRKFSCSFCNKTFRQKEKLKYHTRTHTGERPHLCQTCGKSFIRKSRLDDHILRHQGKKRYRCGHCSKSYAGAWDLKQHVKKQHPTVEEMSPTKPERKKTPGSALGTANDDSNNPDDPVAIIDEEDEEDEDGGSHSEEECADGQPGILSVPHISVDPKQTENQLASHPLLSQVVVQSGTNAAENNEILLHLNPVTSVLQNSTPSSLNQPKILLHLDSLQLQSPSLYLRKNSNDFGSKFLLQLNNSSEQQNQSLVGTTNNSDSNSRILIQLDPRHSQSESLSASGGASTNSNSKILLQLNPVAQQSQTQAISTNTILTLADTIHLVDDVNLGGLMTQYIQLATAQTETTRTGDLPVIQLPTQSSSAATYQLQGQPGQIFTVSGFEVPTITL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01450952;
- 90% Identity
- -
- 80% Identity
- -