Basic Information

Insect: Timema douglasi
Gene Symbol: -
Assembly: GCA_901482245.1
Location: CABEEJ010001730.1:64389-65291[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 3e-05 0.0072 19.0 1.3 1 23 104 126 104 126 0.99

2 7 3.5e-06 0.00084 21.9 0.4 1 23 132 155 132 155 0.96

3 7 0.00024 0.056 16.2 0.7 2 23 162 183 161 183 0.97

4 7 3.4e-05 0.008 18.8 0.5 1 23 189 211 189 211 0.95

5 7 7.9e-05 0.019 17.7 5.5 1 23 217 239 217 239 0.98

6 7 6.3e-06 0.0015 21.1 2.1 3 23 247 267 246 267 0.97

7 7 1.3e-05 0.003 20.2 1.6 1 23 273 296 273 296 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	3e-05	0.0072	19.0	1.3	1	23	104	126	104	126	0.99
2	7	3.5e-06	0.00084	21.9	0.4	1	23	132	155	132	155	0.96
3	7	0.00024	0.056	16.2	0.7	2	23	162	183	161	183	0.97
4	7	3.4e-05	0.008	18.8	0.5	1	23	189	211	189	211	0.95
5	7	7.9e-05	0.019	17.7	5.5	1	23	217	239	217	239	0.98
6	7	6.3e-06	0.0015	21.1	2.1	3	23	247	267	246	267	0.97
7	7	1.3e-05	0.003	20.2	1.6	1	23	273	296	273	296	0.89

Sequence Information

Coding Sequence: ATGCAGCACAATTTGTCTTGCAGGTGGGGACTAGAGGCTGCCCTGCAAGACAAAAAACCACAGGAAGGGATAACTTGCATAAAGAAATCACAACCAACTCAAAGTGACTCTAACATTAATTCCTCAGAAGACGGTTTCAATCTTGATCAGTTTGctcattacaaaaaattgtacGAGTCATTGATGTCACTGGATGAAGATGTGGATGATGAGAACCTAATTGTTGAGAGTAGGAGTTCAGCAAGTGGGAGGGCGAACTGGGTTAGGCGTGTTGCTGCAATGCTTGAAGACATGGAATCTAAACCTATATATGAGTGTGAGCATTGTGGCCGAAGGCTCAAGTCGAGGTTGACCCTGGAGAACCATGTCCGCATCCACACAGGTGAGTGGCCCTTCACCTGCCACATCTGTGGGAAGAGCTTCCGCGCCAACATCGGCCTGGTGAGACATGTGCGTGATGTGCATGATGGCGTGAAAAGCTCGCCTTGCGATATTTGTGGCCGCATGTTTGCCAACAAGCGCACCAAGGATGACCACCGCCGCACACACACAGATGAGCGGCCCTATGTCTGTGCTAAGTGTGGCAAGGCATTCAGGACAAGCGCAGCCCTCTACATGCACAACAAGTTCCATGTTGATATTTTCCCATTCCATTGCACTTATTGTGATAAGAAGTTCCGGCTGCGCTCCCATTTGGCACCGCACATCCGCACTCATACGGGAGAGAAACCCAATTGTTGTGATATTTGTGGTAAGGGCTTCAATCAGAAGACTGAGCTCAAGAATCATCGCCTTATACATTCAGAGACTAGGAACTTTGATTGTTCTTCTTGTGGAAAGAGTTTTAAACAGAAGAGAAGTCTCAAGAACCACGAGATCGCATTTCACAGGAGAATGGACTGA
Protein Sequence: MQHNLSCRWGLEAALQDKKPQEGITCIKKSQPTQSDSNINSSEDGFNLDQFAHYKKLYESLMSLDEDVDDENLIVESRSSASGRANWVRRVAAMLEDMESKPIYECEHCGRRLKSRLTLENHVRIHTGEWPFTCHICGKSFRANIGLVRHVRDVHDGVKSSPCDICGRMFANKRTKDDHRRTHTDERPYVCAKCGKAFRTSAALYMHNKFHVDIFPFHCTYCDKKFRLRSHLAPHIRTHTGEKPNCCDICGKGFNQKTELKNHRLIHSETRNFDCSSCGKSFKQKRSLKNHEIAFHRRMD*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01448903;
90% Identity: iTF_01448903;
80% Identity: -