Tdou020002.1
Basic Information
- Insect
- Timema douglasi
- Gene Symbol
- ken
- Assembly
- GCA_901482245.1
- Location
- CABEEJ010001730.1:86717-99328[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00053 0.13 15.1 0.2 1 23 150 172 150 172 0.98 2 12 0.37 87 6.1 3.3 2 23 210 239 209 239 0.82 3 12 4.7 1.1e+03 2.6 2.0 1 23 245 268 245 268 0.86 4 12 0.016 3.7 10.4 0.6 5 23 272 290 270 290 0.95 5 12 0.0068 1.6 11.6 2.0 1 23 296 318 296 318 0.94 6 12 3.7e-05 0.0087 18.7 0.1 1 23 404 426 404 426 0.98 7 12 2.3e-05 0.0054 19.4 2.6 1 23 432 455 432 455 0.96 8 12 2.3e-05 0.0055 19.3 0.5 2 23 462 483 461 483 0.97 9 12 3.3e-05 0.0078 18.9 1.4 1 23 489 511 489 511 0.97 10 12 0.023 5.6 9.9 7.6 1 23 517 539 517 539 0.98 11 12 0.0003 0.071 15.9 1.2 1 23 545 567 545 567 0.95 12 12 0.00037 0.087 15.6 5.7 1 23 573 595 573 596 0.95
Sequence Information
- Coding Sequence
- ATGCACACACAGGAGATAAACTCTGACATTAGTGGCTCTATAAGCCAGTTGGTGCTCAGAAATGAGATACACCCTGACATTAGAAACACTATAAACCAGGCAGTGCACACTCAGGAGCTACATCCTGGCATAAGCGACTCTACGAGCCAGGCAGTGCACACAAAAGCAATTCACACTAAGGAGATTCACTCGGACATCAGCGACCCTATAATCCAGGCAGTGCGCAAGCAGGAGACTCACTCTGACATCAGCAACCCTATAATCCCGGCAGTACGCAAGCAGGAGATTCACTCGGACATCAGCGACCCTATAATCCAGGCAGTGCGCAAGCAGGAGATTCACTCGGACGTCAGCAACCCTATAATCCAGGCAGTGCACATGCATGAGATACACCTCAACATAAGTGCTTATAGCCAGGTAGTTCACATGCAGGAAAAACACCCCATGTATGAATGCAACTTTTGTGGTCTAATCCTGACAAATCGAGACAATATGAAGCTCCACCTGGAAGTGCACAACAATCCTGAATGGCCCTCAAGGGACAATTTGGTTGAATCTGACCACGGCATATCTAGTAAACGGGTTCTGGAAGAACCCTCTGATGATGACGACTCAAAGAAACCCTTCACCTGCCACATGTGCATCAAGAGGTTCAATCTAATGTGCAACTGTGCGTTTGCCAGAAAGGGGGCTGTAGACAACCACATACGAATACATACTGGGGAGAAACCTTACACTTGCAACATTTGTATGAAGAACTTTATGGTGAGGTTGACATTGACTTGCCACCTCAAGGAGGTGCATGAGCACCAGGTGTGTGGGTATGGATTTTACATCAGGCTACTGCTAAAGAACCACATGCGGACACATACAGACGATCGCCCATTCTTCTGCAGTACTTGTAGGAGAACATTCAGGAACAGGCCAACACTAATCTACCATGAGAGCCTTCACCAAATTGGGCATGTAAACAAGGAAAAAAGGGCGGGGAGGGAGCAGGGGTTTGGAGCAGTGGAGAAAAAGAAGGTGCCAGGGCAGTCCGCTAGGGGAGTAGTGTTCGTAGCTCACGGCATCGTACCAGTGATATGCAGGTGGAAACAGACCCATTTGACAACACCGTATGGTGTATTGCATGAAGCTGACATTCCTAAATGGTTCAAAAATGAAGAGTCCGAGTCGGAGATCGTTGAGATGCCCGATCGGCCCATCTTTGAGTGTGATTACTGTGGTAAGATTTTGGCGTCAAGGGAGAACATAAGGGTGCATCTCAGGATCCACACTGGGGAACGCCCATTCACATGCCACGTGTGCGGCAAGTGTTTCAAGGCACCATCTGGCATCAAGCGTCATCTCAAGGAGGTTCACGAGGGGGTTAAGGACCAAACATGTGAAGTATGCAGTCGCTCATTTGCTAACAGACGAACACTTGAGGACCATTTACGCATTCACAGCGGGGAGCGTCCATTCGTGTGTGCGGCCTGCGGGAAGACATTTAAGACAAAGGCATCGTTGCATGTCCACAACCGCAGCCACAGCGATGTTTACCCATTCCCATGCAGCCAGTGCAACTGCAAATTTCATACTCAACACAGTTTGTCAGTTCATCTGCTCCGCCACACTGGTGAGAAACCACACGCTTGTAATGTGTGTGGCCGTAGGTTCCGGATCAAGTACGAGCTCGGGCGACATAAGCTTGTTCATTCTGAGTACAAACCGTTTGTATGCATGGTGTGTGGACACTCGTTCAGACAGAGGAAGTATCTGATGAATCACAACAAGACCCATCACAGGGAATGTTTCACAGAACTCATTGTTTGCTGA
- Protein Sequence
- MHTQEINSDISGSISQLVLRNEIHPDIRNTINQAVHTQELHPGISDSTSQAVHTKAIHTKEIHSDISDPIIQAVRKQETHSDISNPIIPAVRKQEIHSDISDPIIQAVRKQEIHSDVSNPIIQAVHMHEIHLNISAYSQVVHMQEKHPMYECNFCGLILTNRDNMKLHLEVHNNPEWPSRDNLVESDHGISSKRVLEEPSDDDDSKKPFTCHMCIKRFNLMCNCAFARKGAVDNHIRIHTGEKPYTCNICMKNFMVRLTLTCHLKEVHEHQVCGYGFYIRLLLKNHMRTHTDDRPFFCSTCRRTFRNRPTLIYHESLHQIGHVNKEKRAGREQGFGAVEKKKVPGQSARGVVFVAHGIVPVICRWKQTHLTTPYGVLHEADIPKWFKNEESESEIVEMPDRPIFECDYCGKILASRENIRVHLRIHTGERPFTCHVCGKCFKAPSGIKRHLKEVHEGVKDQTCEVCSRSFANRRTLEDHLRIHSGERPFVCAACGKTFKTKASLHVHNRSHSDVYPFPCSQCNCKFHTQHSLSVHLLRHTGEKPHACNVCGRRFRIKYELGRHKLVHSEYKPFVCMVCGHSFRQRKYLMNHNKTHHRECFTELIVC*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -