Basic Information

Insect: Timema douglasi
Gene Symbol: -
Assembly: GCA_901482245.1
Location: CABEEJ010009887.1:464-3376[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.03 7 9.6 0.0 2 23 170 191 169 191 0.96

2 11 0.00052 0.12 15.1 0.6 1 23 197 219 197 219 0.95

3 11 0.009 2.1 11.2 5.3 1 23 225 247 225 247 0.98

4 11 1.2e-06 0.00028 23.4 2.7 1 23 253 275 253 275 0.98

5 11 0.047 11 8.9 0.5 1 23 290 313 290 313 0.92

6 11 3.7e-05 0.0089 18.7 4.7 1 23 319 341 319 341 0.99

7 11 2.2e-05 0.0053 19.4 1.4 1 19 347 365 347 369 0.96

8 11 0.018 4.2 10.3 5.7 1 23 375 397 375 397 0.97

9 11 3.6e-06 0.00086 21.9 0.2 1 23 403 425 403 425 0.96

10 11 0.00053 0.12 15.1 1.6 1 23 431 453 431 453 0.95

11 11 0.00047 0.11 15.2 9.9 1 23 460 482 460 483 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.03	7	9.6	0.0	2	23	170	191	169	191	0.96
2	11	0.00052	0.12	15.1	0.6	1	23	197	219	197	219	0.95
3	11	0.009	2.1	11.2	5.3	1	23	225	247	225	247	0.98
4	11	1.2e-06	0.00028	23.4	2.7	1	23	253	275	253	275	0.98
5	11	0.047	11	8.9	0.5	1	23	290	313	290	313	0.92
6	11	3.7e-05	0.0089	18.7	4.7	1	23	319	341	319	341	0.99
7	11	2.2e-05	0.0053	19.4	1.4	1	19	347	365	347	369	0.96
8	11	0.018	4.2	10.3	5.7	1	23	375	397	375	397	0.97
9	11	3.6e-06	0.00086	21.9	0.2	1	23	403	425	403	425	0.96
10	11	0.00053	0.12	15.1	1.6	1	23	431	453	431	453	0.95
11	11	0.00047	0.11	15.2	9.9	1	23	460	482	460	483	0.95

Sequence Information

Coding Sequence: ATGCATGTTTCAGGTTCTCCACCTGTTTGCAAATGCTGTAAGGCCGCCTGCGAGAGTGTGTTTTGTTGGTCGGAACATTGCGACAACTGTCGAGCTACCAAGGAAATGTTTGTGATGGTTAAGGACCTAAGTTCGGCCGGCGGAGACTACGACTGGTCGACGGTGAACCTTTGTTTGGTCGGCGCAGACAACGATTGGTCAAACGCGAACGTCGATTCCGCAAATTTGGACGACAAATTGTTAACTTTAGACCTTGGTTCGGTCAACGCGGATGAGAACTTTTCAACAAAGTTCCCTATTTACATCGATCTCACAAACTCTTCTGGTGAGCACAGCGAGTCGTCTAATTCGAAGGAAAGTGTCGGCGACAGTTTCAGAACAAATGAGCCCTTGGACAGGTCGGACCAGGAAACTAACGAATTGACGCAAAATGATTGGGAGGTTTCTTCCTCGAGTGATTATTCGTCCGAGGTCTCTGGACTGATTTACTCCAACTCTGATGACAAACGCTGTAAGTACTGCGGGGTCATAATCCCCCAACTCGAGGAACTTGCGGCTCACCTCACGCAGCACTACAAAGAAAAACCGTTCTTGTGCAACGTTTGCGGGGCGATATTCAAACTGAAAACGCAACTCACTGTGCATACGTTCACACACACAAGAGAAACCATATTCACGTGCGACATTTGTAAATCCGGGTTCTATACAAAGGGTCACCTGAGGTGCCACATGCTGACGCACACCGGCGAGCGCCCGTACGAGTGTCCCACCTGCGGTGCCCGGTTTAATCAAAGTTCGCACCTGAAGAGACACGTTCATGTCCACGACTCGAATCGACCAAAGAAAAGAGCCCCCAGGGCTAAGAAGTATTTCTGCGAGAAATGTGATGCCAAATTTACTACGGTAGCGAGTAGCAAGTTACACATGTTGTATGCCCATGAAGGTTTGGTGAAATACTCTTGTTCGCACTGTAGCGCCGAATTCTACCACAAGGCTAACCTCAACTCTCACCTAAGAACGCACACGGGCGAACGTCCGTTTCGTTGTACGGTTTGTGACGTCAGCTTCAAGCAAAGCTCCCACCTCCTGAGACATTCCTGGATACACTCGGGTAAGAAACCCTACCCCTGTTCGTTCTGCGACATGTCGTTCAGACAGAAGTTCTCTTTGAAGTGCCACACGTACACTCACACCGGGGAGAAACCGTACGAATGCCCGGTCTGCGGGAAGCGGTTCCGGTCGCCGGGCGACATGAGTAAACACAAGGTCTCTCATACGGATCAGAAGCTGTTTAGCTGCATGCTTTGTGACCGGACTTTCTTCTACAAGGTCTCGTTGAAAAACCACATCTTCGCGCACACCGGAGAGTCAAAGAGGCACACCTGCAACACTTGCGGCAAGAGTTTTTCCAACAAAAATTCGCTTCACCATCACGAGTCCTCACATCATCCAAAGGACGATACAGTTGAGGGACAGTCTTGA
Protein Sequence: MHVSGSPPVCKCCKAACESVFCWSEHCDNCRATKEMFVMVKDLSSAGGDYDWSTVNLCLVGADNDWSNANVDSANLDDKLLTLDLGSVNADENFSTKFPIYIDLTNSSGEHSESSNSKESVGDSFRTNEPLDRSDQETNELTQNDWEVSSSSDYSSEVSGLIYSNSDDKRCKYCGVIIPQLEELAAHLTQHYKEKPFLCNVCGAIFKLKTQLTVHTFTHTRETIFTCDICKSGFYTKGHLRCHMLTHTGERPYECPTCGARFNQSSHLKRHVHVHDSNRPKKRAPRAKKYFCEKCDAKFTTVASSKLHMLYAHEGLVKYSCSHCSAEFYHKANLNSHLRTHTGERPFRCTVCDVSFKQSSHLLRHSWIHSGKKPYPCSFCDMSFRQKFSLKCHTYTHTGEKPYECPVCGKRFRSPGDMSKHKVSHTDQKLFSCMLCDRTFFYKVSLKNHIFAHTGESKRHTCNTCGKSFSNKNSLHHHESSHHPKDDTVEGQS*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01450886;
90% Identity: iTF_01450886;
80% Identity: -