Basic Information

Insect: Timema douglasi
Gene Symbol: SCRT2
Assembly: GCA_901482245.1
Location: CABEEJ010000219.1:285582-291868[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 4.3e-07 0.0001 24.8 1.5 1 23 290 312 290 312 0.99

2 9 0.085 20 8.1 0.1 3 23 323 343 321 343 0.92

3 9 4.9e-05 0.012 18.3 0.2 1 23 347 369 347 369 0.96

4 9 0.0022 0.53 13.1 0.1 3 17 377 391 375 392 0.94

5 9 4.3e-07 0.0001 24.8 1.5 1 23 640 662 640 662 0.99

6 9 0.085 20 8.1 0.1 3 23 673 693 671 693 0.92

7 9 4.9e-05 0.012 18.3 0.2 1 23 697 719 697 719 0.96

8 9 1.1e-07 2.7e-05 26.6 0.7 3 23 727 747 725 747 0.98

9 9 0.00022 0.051 16.3 1.4 1 21 753 773 753 774 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	4.3e-07	0.0001	24.8	1.5	1	23	290	312	290	312	0.99
2	9	0.085	20	8.1	0.1	3	23	323	343	321	343	0.92
3	9	4.9e-05	0.012	18.3	0.2	1	23	347	369	347	369	0.96
4	9	0.0022	0.53	13.1	0.1	3	17	377	391	375	392	0.94
5	9	4.3e-07	0.0001	24.8	1.5	1	23	640	662	640	662	0.99
6	9	0.085	20	8.1	0.1	3	23	673	693	671	693	0.92
7	9	4.9e-05	0.012	18.3	0.2	1	23	697	719	697	719	0.96
8	9	1.1e-07	2.7e-05	26.6	0.7	3	23	727	747	725	747	0.98
9	9	0.00022	0.051	16.3	1.4	1	21	753	773	753	774	0.94

Sequence Information

Coding Sequence: ATGGGGGGATTTGTAAGATCTGGTATTGTACTGCTTGGGGTTGAGGTAAAGGGTGGGTTGGGGGTCGCGAGGGGAGGGAAAGGGGGTTTGTTGAAGCTTCTCTTAGCAAACACGAACACATCGGAGCTACAAGATGAAGTGTGCCTCGAGGCATTTACTCTGGGGTGGAGTTATTGCTGTTACGTCCAGGACCTCTCTTCGTTGCACTTCGCCGCGTACCTGTCCCGGGCGGACAGGGACCGTGACGAAGGCGTGACGTCACTTCACCACCCTTCCCAGCACCCACCCGCCACGCCACAGCAGCCATTCACCCACCCGCCCTCCTACGTGACCCTGCGGACCGCCGCCGAGGTCGCCGCGGACGTCAGACTCGCGTGGTCAGATGCCCAGTCCCCGCCTCCTCCCCCGCCCCCGCCGCTCAGAGCCAGGAAGTCTCTAGCCATGTGCTTCACCAGCACCGGAGCCGCCTTATCGCTGCCGCCCAAGAAGAAGGACATCTACAGGCCGTACTCCTTGGATGACCGGCCTCTCAGGCCTCCCTCCCCTCCACCGTCGACGGCGCCACCCTCACCTCCGACGGTGATGAGGCAACCCGCCGAGGAAGACCTCACGGCAGCGCATGCCATCTTGGACCTGAGCGCCTCAACGAACTCTGCGGTCCCGACCGTCCAGACACCGATACTGAGGTCGCCCCCCGAGGAACCGAAGAGGCCTTTGTCAGCGCAGTCATTCATCGCCGCGCAGGCAGGTAAGACCGTCGCTTACACCTACGAGGCGTTCTTCGTGAGTGACGGCCGGTCCAAGAGGAAGACTATAGGCGTGCTACCGGGTGTAGGGGTTCCCCCCAGCGGGGACCAGAGGCCGAGGTACACCTGCTCCGAGTGCGGGAAACAGTACGCGACATCGTCGAACCTGTCCCGGCACAAGCAGACGCACCGCTCGCTCGACTCGCAGTCGGCCAAGAAGTGTATCACCTGCGGTAAGGCGTACGTTAGCATGCCCGCGCTGGCGATGCACCTGTTGACTCACAAGTTGAGTCACGCGTGCGGCGTGTGCGGGAAGCTTTTCAGCCGGCCGTGGCTGCTCCAAGGTCACCTGCGCTCTCACACGGGGGAGAAACCTTTCGGGTGTGCGCACTGCGGCAAGGCGTTCGCCGACCGCAGCAACCTGCGCGCTAAAAATTACGAACATAATAGAGGGATTCGAAGGGATGTTTCTCTTGTTTCAGGTTACGTCCAGGACCTCTCTTCGTTGCACTTCGCCGCGTACCTGTCCCGGGCGGACAGGGACCGTGACGAAGGCGTGACGTCACTTCACCACCCTTCCCAGCACCCACCCGCCACGCCACAGCAGCCATTCACCCACCCGCCCTCCTACGTGACCCTGCGGACCGCCGCCGAGGTCGCCGCGGACGTCAGACTCGCGTGGTCAGATGCCCAGTCCCCGCCTCCTCCCCCGCCCCCGCCGCTCAGAGCCAGGAAGTCTCTAGCCATGTGCTTCACCAGCACCGGAGCCGCCTTATCGCTGCCGCCCAAGAAGAAGGACATCTACAGGCCGTACTCCTTGGATGACCGGCCTCTCAGGCCTCCCTCCCCTCCACCGTCGACGGCGCCACCCTCACCTCCGACGGTGATGAGGCAACCCGCCGAGGAAGACCTCACGGCAGCGCATGCCATCTTGGACCTGAGCGCCTCAACGAACTCTGCGGTCCCGACCGTCCAGACACCGATACTGAGGTCGCCCCCCGAGGAACCGAAGAGGCCTTTGTCAGCGCAGTCATTCATCGCCGCGCAGGCAGGTAAGACCGTCGCTTACACCTACGAGGCGTTCTTCGTGAGTGACGGCCGGTCCAAGAGGAAGACTATAGGCGTGCTACCGGGTGTAGGGGTTCCCCCCAGCGGGGACCAGAGGCCGAGGTACACCTGCTCCGAGTGCGGGAAACAGTACGCGACATCGTCGAACCTGTCCCGGCACAAGCAGACGCACCGCTCGCTCGACTCGCAGTCGGCCAAGAAGTGTATCACCTGCGGTAAGGCGTACGTTAGCATGCCCGCGCTGGCGATGCACCTGTTGACTCACAAGTTGAGTCACGCGTGCGGCGTGTGCGGGAAGCTTTTCAGCCGGCCGTGGCTGCTCCAAGGTCACCTGCGCTCTCACACGGGGGAGAAACCTTTCGGGTGTGCGCACTGCGGCAAGGCGTTCGCCGACCGCAGCAACCTGCGCGCACACATGCAGACCCACTCGTCCGACAAGAACTACGCGTGCACTCGCTGCCACAAGACGTTCGCCCTCAAGTCTTACCTGAACAAGCACCTCGAGTCGGCCTGCTTCAAGGAGGGGGGCGGCGCCATACCCGGACCCGACGAGGCAGCGTCGCCTGTCATGGCAGCGTGCCCGTCCCTTTCGCCCCCACCACACCTACCACCGGCAACCCCTGTGCACCTTAGCATAGTTTACTCCTGCTGA
Protein Sequence: MGGFVRSGIVLLGVEVKGGLGVARGGKGGLLKLLLANTNTSELQDEVCLEAFTLGWSYCCYVQDLSSLHFAAYLSRADRDRDEGVTSLHHPSQHPPATPQQPFTHPPSYVTLRTAAEVAADVRLAWSDAQSPPPPPPPPLRARKSLAMCFTSTGAALSLPPKKKDIYRPYSLDDRPLRPPSPPPSTAPPSPPTVMRQPAEEDLTAAHAILDLSASTNSAVPTVQTPILRSPPEEPKRPLSAQSFIAAQAGKTVAYTYEAFFVSDGRSKRKTIGVLPGVGVPPSGDQRPRYTCSECGKQYATSSNLSRHKQTHRSLDSQSAKKCITCGKAYVSMPALAMHLLTHKLSHACGVCGKLFSRPWLLQGHLRSHTGEKPFGCAHCGKAFADRSNLRAKNYEHNRGIRRDVSLVSGYVQDLSSLHFAAYLSRADRDRDEGVTSLHHPSQHPPATPQQPFTHPPSYVTLRTAAEVAADVRLAWSDAQSPPPPPPPPLRARKSLAMCFTSTGAALSLPPKKKDIYRPYSLDDRPLRPPSPPPSTAPPSPPTVMRQPAEEDLTAAHAILDLSASTNSAVPTVQTPILRSPPEEPKRPLSAQSFIAAQAGKTVAYTYEAFFVSDGRSKRKTIGVLPGVGVPPSGDQRPRYTCSECGKQYATSSNLSRHKQTHRSLDSQSAKKCITCGKAYVSMPALAMHLLTHKLSHACGVCGKLFSRPWLLQGHLRSHTGEKPFGCAHCGKAFADRSNLRAHMQTHSSDKNYACTRCHKTFALKSYLNKHLESACFKEGGGAIPGPDEAASPVMAACPSLSPPPHLPPATPVHLSIVYSC*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -