Basic Information

Insect: Timema douglasi
Gene Symbol: -
Assembly: GCA_901482245.1
Location: CABEEJ010001867.1:5183-32131[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.33 78 6.3 0.1 3 20 611 628 610 630 0.92

2 16 0.012 2.9 10.8 3.8 1 23 636 658 636 658 0.95

3 16 5.1e-07 0.00012 24.6 3.5 1 23 664 686 664 686 0.98

4 16 0.00096 0.23 14.3 5.8 1 23 692 714 692 714 0.98

5 16 0.0015 0.35 13.7 0.1 1 23 719 741 719 741 0.95

6 16 4 9.4e+02 2.9 1.0 1 13 750 762 750 764 0.86

7 16 0.032 7.7 9.5 0.3 1 23 784 808 784 808 0.96

8 16 1.9e-06 0.00044 22.8 1.7 1 23 814 836 814 836 0.99

9 16 0.0072 1.7 11.5 0.7 1 23 842 864 842 864 0.98

10 16 2.8e-05 0.0068 19.1 0.7 1 23 879 901 879 901 0.98

11 16 0.0065 1.5 11.6 1.1 3 23 909 929 907 929 0.97

12 16 0.00022 0.052 16.3 0.4 1 23 935 957 935 957 0.98

13 16 1.6e-05 0.0039 19.8 3.2 1 23 963 985 963 985 0.98

14 16 0.0016 0.39 13.5 0.3 3 23 993 1013 991 1013 0.97

15 16 0.025 6 9.8 3.5 1 23 1019 1041 1019 1041 0.98

16 16 0.0044 1 12.2 2.1 1 23 1054 1077 1054 1077 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.33	78	6.3	0.1	3	20	611	628	610	630	0.92
2	16	0.012	2.9	10.8	3.8	1	23	636	658	636	658	0.95
3	16	5.1e-07	0.00012	24.6	3.5	1	23	664	686	664	686	0.98
4	16	0.00096	0.23	14.3	5.8	1	23	692	714	692	714	0.98
5	16	0.0015	0.35	13.7	0.1	1	23	719	741	719	741	0.95
6	16	4	9.4e+02	2.9	1.0	1	13	750	762	750	764	0.86
7	16	0.032	7.7	9.5	0.3	1	23	784	808	784	808	0.96
8	16	1.9e-06	0.00044	22.8	1.7	1	23	814	836	814	836	0.99
9	16	0.0072	1.7	11.5	0.7	1	23	842	864	842	864	0.98
10	16	2.8e-05	0.0068	19.1	0.7	1	23	879	901	879	901	0.98
11	16	0.0065	1.5	11.6	1.1	3	23	909	929	907	929	0.97
12	16	0.00022	0.052	16.3	0.4	1	23	935	957	935	957	0.98
13	16	1.6e-05	0.0039	19.8	3.2	1	23	963	985	963	985	0.98
14	16	0.0016	0.39	13.5	0.3	3	23	993	1013	991	1013	0.97
15	16	0.025	6	9.8	3.5	1	23	1019	1041	1019	1041	0.98
16	16	0.0044	1	12.2	2.1	1	23	1054	1077	1054	1077	0.96

Sequence Information

Coding Sequence: ATGAAGACATATGGGAAAGGAGTGGCAGTAGTAATGGGGGATCTTAAAGCAAAAGGCGGAAAAGAAAGAGGAGGTTTTGAGGAGGTGTTAGGGAAAGAAGAATGGGAACAGAGAAACGAGGATGATGATGAAAAGAAGGTATGGATTTGGGAAAGCCTGGTAATGGTATCCATGGATGTGGAGAAGTCATATTACAGCGTGGATAGAAATGAAGTTTGGAAAGTGATGGTGGAGGCTGAAAAGGAAAGAGgcgttGAGTTTGATCTAACAAAGCTGGAAGTAGCCGCCAGTCAGCTCTGTAGAGTTTGTGGTCAGTTAAGTCAGCGGCTTACCTCTATCTTTGGTAAGAAAGGCACAACCATGGAGTTGGCTTATAAGATTCATACTCATCTTCCTATTTTGGTGACCAAGGATGACTTGATGCCATTGAGCCTCTGCGAGCCCTGCATACATAAGCTGGAGCTGTGCCATGACCTTGTAAATACATGTCTTGACGGTGACACCAAGATTCGCCAGATATTGGGACTGCCGATAGAAAGAGAAGAGTTTCTCCAAGAAGAAGAGTTGATTACAATAAAAGAGGAAGATTCTTCTGAAACTCAGCTGAATGAAGAGCTTGACCGAGAAGATATTAAATTTGAGGTCCAGAATCAAGACACTTTATCAGAAAGATTGATATCAGAGTGTGATGTCCGTTCAGAGGATTGTGAAATATTGAATTGGCAGGAAGAAGATCAGCTAAATCCAGACAAAGCTGGTCTCGCTGCCCAACCAGAatccaaaataaatgttggcGCTAAAAAATTACAAAGCAACATTAAATTGAACTCTAGTTTGAAGAAGATGataaaaaacAAACCATGTAAACTTGTTGTGATAAAAACAAAGTCCAAAGAACCACTGTCTAATGAAGAGATCATGAATGTACTTCGAACAAAAGGAGAAAAACATAAGTTGTTTGTACCTGGAAAGAAATACAGcaccaatattttgaaaagCTTTAATGAAACATCAGGGGAGCAATCAAGTGAGCTCCAAGAATCTGAGGTGTTAATGGAATCTCTTGAAACCGATGTGACATTGACTGACGAGCAGGAGATTCATTCTGACTTAGAGGTATCATCAGAACAGATGCCAGTCACTTTGAAAAAACTTGATGAACCTTTTCTCGAAACCTCTCTAGAACAATTGCCGACTACAGAGGTCCATGATGGATGCACTTGGGAAAATATGATTGCCTCTAGCCGCAAGAAAAGCATCACTTACTTCTGTTTCTACTGCGAAGAGACAATGATTGGAACCGAAACTCTCCTCTCCCACCATTCCTTAAATCATCCAGACAAAGTGTTTATATGTACCAAGTGCTCACCTCCCCTCGTCTTCTATGAGTCCAAACATTTGTTTGATAAGCACATGCTTCATCATTCGCAGGATTGGAAGAATAATACGGACATTACGTCACCATTTTATGAACCAGCATTAAATGAAGTTGATTCTGTAATCACCCTCCCACTTACTGGCTCTGCTGATAACATGATCCAGGTTGAAGACTTTGATAATGAAGAAGATTGTTCATTCATAATTGAGAGTGCTTTACTCGAACCTGAGGTAAATATAAATGACATCAAACCCAGAGTAGATATAGCCGACACCATTATCCAAGTGAACAGGCAATTTAAGAAGAAAAGGGAAGATGACTTGTCATTATCTTATGACATAACCTTGAATGGGAAAGATAATCAAGAAGGGAACACTTCATCGAAGCAGCATAAACTTTCTGTGGTTTCTATGAAGAAGAAACGAAAGCCACGTTCTAAGTATGGCCCTTACTGCAGGTATTGCGATCTTATGTTTGATTCCATGGAAGAGTTGGCTATGCACAAGAGTCAGGACTCTTGCAAGACCCACGTCTGTCAATACTGTGGGCGACAGTTCCACACCAAGAACAAACTCCTGGAGCATGAGCTTCTCCACTCAAAAGAGAGGCTCTTCATGTGTGAAAAGTGCGGCAAGAGTTTCCGTAGCTCCCACCAACTGCGAAATCATCAGATGATACACACATCCAACAAGAAGTACTTCTGCACCCATTGCAGTAAGTCTTACAACACCTACGCTAGTTACCGGTACCACATGAACACCCACACCAATGAGGTGTATCTCTGCGACATTTGTGGGAAAGGGTTGAAGAACTTGGGCAGTCTGCGTGTACACAGTCTCAGGCACACTGACCCGGAGAATTTCAAACGCTTTGCTTGTGAATTTTGTGGGCACAAGTTTTACAGCAGCATGTCTTGTATTGTTAGGGCCCGGATGCTGGAGCATGTACGATGCCACTCCAAGGAACGGCCATTCAAATGCCCTGTGGAAGGTTGCCTCAAGGCATTCCAGCTAATGTGGCATCTTAAGCGGCACGCGTTGGTTCATTCTGATCTTCGTAAGTACACATGCAAGGTGTGTGGGAGTAGCTTCAAACAGCGCAAGAACTTGAATGTCCATGTCAAGACCCATGAGGGTAATCACAAGTACAAGTGCAGTGTGTGTCAGAGTCCATTCGACTACTTGAAGGACCTCATCTCACATCGCTCCTCGCATTCGGAGGAAGAGCTCAGAGCCAACAAGTTCAAGAAGAGCCAGTTTGAATGTCCTGAATGCAGTAGAATGCTCTCGAGTAAAGTGTCCTTGCAACATCACATGCTCATCCATACTGGTGAGAAGCCTTTTGGTTGTAACTTCTGCAACAAGTCTTTCAAGAGCAAAGTAGCCAGGGACGTTCATCTACGCCTACACACGGGTGAAAAACCTTATAACTGCAGCTACTGTGAGGCCTCTTTCACTCTGAAGTCATACCTGGTGGTTCATGAACGCATCCACACAGGTGAGGCACCATTCAAATGTGACAAGTGCGACAAAGCATTCCGCTCAAATGTCAACCTCCATCAACATTCCAAGGTACATTCTGATAACCGTCCATACGGCTGCGCAGTCTGTTCGAGGGCTTTTCGCCGTCGAGAGGCCCTTTACACGCATTTCCGAATACATACAGATGAGCGTCCATTTGTTTGCAGGGTTTGTAGTCGTGGTTTCAAGCAAAAGGGCGATTGTAATAAACATGAGAAAactcattacaaatattcaccTAATGTAACACTTGCTCCGGTGTTTTCATGTCCTTTCTGTAAAAAACATTTCAACTCCCCTACCAGTGTTGAAGAGCATTTCTCTACAGTTCATGGTATAATTTCTAGTCATTCTGAAGAGAACACAATGATTATGGTCAATGCTGATGATCTTTCAAACGTGTCAGAGGTGGAGATTGCTATTGATGGAATACCAGAATTTATAATAGGTAATTAG
Protein Sequence: MKTYGKGVAVVMGDLKAKGGKERGGFEEVLGKEEWEQRNEDDDEKKVWIWESLVMVSMDVEKSYYSVDRNEVWKVMVEAEKERGVEFDLTKLEVAASQLCRVCGQLSQRLTSIFGKKGTTMELAYKIHTHLPILVTKDDLMPLSLCEPCIHKLELCHDLVNTCLDGDTKIRQILGLPIEREEFLQEEELITIKEEDSSETQLNEELDREDIKFEVQNQDTLSERLISECDVRSEDCEILNWQEEDQLNPDKAGLAAQPESKINVGAKKLQSNIKLNSSLKKMIKNKPCKLVVIKTKSKEPLSNEEIMNVLRTKGEKHKLFVPGKKYSTNILKSFNETSGEQSSELQESEVLMESLETDVTLTDEQEIHSDLEVSSEQMPVTLKKLDEPFLETSLEQLPTTEVHDGCTWENMIASSRKKSITYFCFYCEETMIGTETLLSHHSLNHPDKVFICTKCSPPLVFYESKHLFDKHMLHHSQDWKNNTDITSPFYEPALNEVDSVITLPLTGSADNMIQVEDFDNEEDCSFIIESALLEPEVNINDIKPRVDIADTIIQVNRQFKKKREDDLSLSYDITLNGKDNQEGNTSSKQHKLSVVSMKKKRKPRSKYGPYCRYCDLMFDSMEELAMHKSQDSCKTHVCQYCGRQFHTKNKLLEHELLHSKERLFMCEKCGKSFRSSHQLRNHQMIHTSNKKYFCTHCSKSYNTYASYRYHMNTHTNEVYLCDICGKGLKNLGSLRVHSLRHTDPENFKRFACEFCGHKFYSSMSCIVRARMLEHVRCHSKERPFKCPVEGCLKAFQLMWHLKRHALVHSDLRKYTCKVCGSSFKQRKNLNVHVKTHEGNHKYKCSVCQSPFDYLKDLISHRSSHSEEELRANKFKKSQFECPECSRMLSSKVSLQHHMLIHTGEKPFGCNFCNKSFKSKVARDVHLRLHTGEKPYNCSYCEASFTLKSYLVVHERIHTGEAPFKCDKCDKAFRSNVNLHQHSKVHSDNRPYGCAVCSRAFRRREALYTHFRIHTDERPFVCRVCSRGFKQKGDCNKHEKTHYKYSPNVTLAPVFSCPFCKKHFNSPTSVEEHFSTVHGIISSHSEENTMIMVNADDLSNVSEVEIAIDGIPEFIIGN*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01447831;
90% Identity: -
80% Identity: -