Basic Information

Insect: Timema douglasi
Gene Symbol: -
Assembly: GCA_901482245.1
Location: CABEEJ010000001.1:330709-335630[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0001 0.024 17.3 1.7 1 23 701 724 701 724 0.93

2 12 0.059 14 8.6 4.0 1 23 730 752 730 752 0.97

3 12 0.0013 0.31 13.8 3.3 3 23 760 780 758 780 0.96

4 12 0.00039 0.094 15.5 1.5 2 23 787 808 786 808 0.97

5 12 2.9e-05 0.0068 19.1 0.2 1 22 814 835 814 835 0.96

6 12 0.0005 0.12 15.1 3.5 1 23 842 864 842 865 0.93

7 12 8.7e-05 0.021 17.5 0.8 2 23 872 893 871 893 0.97

8 12 7.5e-07 0.00018 24.0 2.8 1 23 899 921 899 921 0.98

9 12 2.8e-05 0.0067 19.1 0.6 1 23 927 949 927 949 0.99

10 12 0.0012 0.29 13.9 1.5 1 23 955 977 955 977 0.97

11 12 0.013 3 10.7 0.9 1 23 984 1004 984 1004 0.98

12 12 4.6e-06 0.0011 21.6 1.7 1 23 1010 1032 1010 1032 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0001	0.024	17.3	1.7	1	23	701	724	701	724	0.93
2	12	0.059	14	8.6	4.0	1	23	730	752	730	752	0.97
3	12	0.0013	0.31	13.8	3.3	3	23	760	780	758	780	0.96
4	12	0.00039	0.094	15.5	1.5	2	23	787	808	786	808	0.97
5	12	2.9e-05	0.0068	19.1	0.2	1	22	814	835	814	835	0.96
6	12	0.0005	0.12	15.1	3.5	1	23	842	864	842	865	0.93
7	12	8.7e-05	0.021	17.5	0.8	2	23	872	893	871	893	0.97
8	12	7.5e-07	0.00018	24.0	2.8	1	23	899	921	899	921	0.98
9	12	2.8e-05	0.0067	19.1	0.6	1	23	927	949	927	949	0.99
10	12	0.0012	0.29	13.9	1.5	1	23	955	977	955	977	0.97
11	12	0.013	3	10.7	0.9	1	23	984	1004	984	1004	0.98
12	12	4.6e-06	0.0011	21.6	1.7	1	23	1010	1032	1010	1032	0.99

Sequence Information

Coding Sequence: ATGACATCTCAGCCATCAAACACACAACCTTCCACCAACACGAGTGGTACTTATTTCCACCGAGGAGGGTACCAACAAGGCAATATGTACAACCCTCTTCTTCCCAGTCAAGGTCATAGTTTGTACAACGGTGTGTTTGGTGCACAGTCGGGGTTCCCGACCCAAAACAACTACCCCCCATCAGGATTCAACAGCTACACCCATGTGGAGCCTTCACTGTGGCTCCCAGATACCCGGGTGACCGCGCCCAGCAGTGTCTCCCTCGGGAACAGAGGCTTATACACCGACAAGAACATGTTACATGAGTCCCAAAGTCTAACCCAGGCTTGCTGTAGCGCTAGCATTGGCACATGCTCGCCCCTTTCGGTCGAGTCGTACAAAGGTATagataaagaattaaattttcctcAGAAGAGCTTGGGGAATTTTGAGTCTCAGAGTTGGTACTGCAGTCCAAGTGTTATTAACTATGGGAACCAGCAGAGTCAAAACATGCAGCAATCATATAAATGCATGGAACAATTCCCGTCTTGTTCTATGGCCCAAGTGAATTCGAATCTCCTCGAACAAACTTTCCCAAAAGATAGGATTGCAACTCATGTCCCGTTGCAGAGTTGCAGCGTTGCAGGGCAAAAACCCGCGGGCTGCATCAAGGAATCAGATAAACCTAGCTGTTTAGAGTTGGACAAAAAACATGGGACTAAATGCATCgacatttcaaacatttatacgAGCTCAGTTCAGCAAGTCTCTCTTCAGAAACAAGCAGAGCACCAAGAGAGTTACTCAAACCAATCCGTGTTCGCTTCTTCAGGAGGCAACTGCTCGCCTCTTTCTGCGGAAGGGCTTTACTCACAAGCGTCTTTATTCCTCCACATGAGCAACGAGAACCAGTCAACCATGAGAAGCCAGACGCATTACGGCATGCAGAAACCTCTCCACCTTAACATGGTGACAGAAAGTTGTAAGCTCTTCTCACCCTCAGAAGGACAACTACCCATAATGCATCATTTTCAAGACCAGAACAGATGCAATGTTGACCCGCCAATGTCTTGTGCATTGATAGAAAATAGCTTGCAGCAAGAGAGTAAGTCTATCAATGCTCACAGTCACCTCCAGGTGGACACTTCGTCCAGTAACCAGTGTGAGCAGACATCGAGGGAGGTGAACAGGATGAGTTGTGAGAACTCGTTCTGTGTGGGTACGCCGGGCGGTCCTCCGAGTTGCTTGAAGCAGTGTGAGGTGGTGTCAGACACATCGCAGGTGCGTGCCAACACGAGCATCGTGACGCTGGCTGTCAGCGTTCCCGAGGAAGAGTCTTCCAGTTTAGGAGGGGAGAGTGATATAGTTGTAGAGGAGACGGAGGAGGAAGATGTGAGCGAGAGTGAGATCTCAATAGACGAGTCTCACACTTTGAAAGGCGACCTCACTCAGTGTCTCGTGTGCAGCATAGAAGATGCTACTACACAGTTGGTACACATCACCGTGGAGTATCCTCAAACATCGGCCTCTTGCACGCCCGTGGCCACCAAACTCACCCAAGTGGTAGCAAGCGAACAGCAGTTTCTCAAGTTTCAAACCGAATTCATCTGCAGGCGATGTCTCAACCTCATCGACACGGTTGACTGTCTGGAAAACAAGCTAGCGTCATTAAAACACGACATACTCCAATTGTTCGGAACTAAGGTAGTATCACTGAAAGAGCTTGAATGTTTAAACTTGGACGCACTTGAAAGTGAATATATCAAGAAATGTGTCGAAGAAAAAGTCGATGACACCCATTTTGACAACTGCATCGAAGAAAGTGTTAAAATTAAGCCGAATGAAAATTTGGTCCAAAATACATCCATAGAGGAGTTGCATTCTGAAAATCAACCAAACACTggtgaaaatattgaaataccTAAAGAAACAAATTTGGATGAAAAAGTTGTACAAACTTATGAAACGGTAAATTCTAGCGTAGAAGTGAATGATACAAAAGTCATTAATGAATTAAgtgtaactaaaaatatagaCCTACCTGAAATAAGCAAAACCTATGATAACAACACTGTCACAGGATCTTTGGGAGCCGGGTGTGAAAAGTCGGTCGAGAAATTTCAATGTGAAGTGTGTTCAAAGTCGTTCTCTAGTAAAGGTTATCTGTCCACCCATAATCAGCAGCAACACACAGATACACCCAACTTCTGTTGTGagaaatgttttcaaaagtttGCAACAAAACAAACCTTTGATGTGCACCAGTTAATACACACTGGAGAGTGCCTTCATCTTTGTGATCGCTGTGGTCGATTGTTTCGTCAGCGGTACAGCCTAGACAATCATTTGCGCAGGCATCAAGACAACTACCCATTGACCTGTAAATACTGTGGTAAAGGGTTTTTACATACTCGGGCCCTTCAAGTACATATCCGGTCACACACTGGTGAGCGCCCTTTTATCTGTGAATACTGCGGCCATCAATTTAGTTCCgaacaaaatttaattgttcATATTCGTACCTGTTCAGGAGATCTTCCATTTAACTGCGACAAATGTGATAAACGTTTTGCGACCATGTCAATGTTGCAAAACCACAAATATCTTCATCACGAAGGTAAGCATCATTTGAAGTGCAGTGAATGTGAAAagggttttttgaaaaacaGTGATCTTAAAGTTCACATGAGGAGTCACACCAACGAAAAACCACATACGTGCAAGATATGCGGTAAACGCTATAGAAATATAGGCAACCTGAACCAGCACATGAAAACACATTTGGAAGACAAACCGTTCAAGTGTGAGCTGTGCAGTGAGATGTTCGTGCGTAGAGCCATGTTAACGGAACACATTAAAAGACACAGTGGGGTGAAGGATTACAATTGCGAGCTGTGCGAGAAGAAGTTTCTGACCCGCCGCAACCTGCAAGCTCATCGCAAGTGGCACAGTGGCACTCTGAAACGTTACACATGTCAGGTCTGCGGGAAGATATTGAACCATGGACTAAGTGCTCATATGAGGACTCACTCGGGAGATAAACCATACACTTGCCTTCAGTGTGATGCGACATTCACAGTTAGAAGTTCTCTAAACAAGCATATGAAGAAACACAATAGGAAAATTTGA
Protein Sequence: MTSQPSNTQPSTNTSGTYFHRGGYQQGNMYNPLLPSQGHSLYNGVFGAQSGFPTQNNYPPSGFNSYTHVEPSLWLPDTRVTAPSSVSLGNRGLYTDKNMLHESQSLTQACCSASIGTCSPLSVESYKGIDKELNFPQKSLGNFESQSWYCSPSVINYGNQQSQNMQQSYKCMEQFPSCSMAQVNSNLLEQTFPKDRIATHVPLQSCSVAGQKPAGCIKESDKPSCLELDKKHGTKCIDISNIYTSSVQQVSLQKQAEHQESYSNQSVFASSGGNCSPLSAEGLYSQASLFLHMSNENQSTMRSQTHYGMQKPLHLNMVTESCKLFSPSEGQLPIMHHFQDQNRCNVDPPMSCALIENSLQQESKSINAHSHLQVDTSSSNQCEQTSREVNRMSCENSFCVGTPGGPPSCLKQCEVVSDTSQVRANTSIVTLAVSVPEEESSSLGGESDIVVEETEEEDVSESEISIDESHTLKGDLTQCLVCSIEDATTQLVHITVEYPQTSASCTPVATKLTQVVASEQQFLKFQTEFICRRCLNLIDTVDCLENKLASLKHDILQLFGTKVVSLKELECLNLDALESEYIKKCVEEKVDDTHFDNCIEESVKIKPNENLVQNTSIEELHSENQPNTGENIEIPKETNLDEKVVQTYETVNSSVEVNDTKVINELSVTKNIDLPEISKTYDNNTVTGSLGAGCEKSVEKFQCEVCSKSFSSKGYLSTHNQQQHTDTPNFCCEKCFQKFATKQTFDVHQLIHTGECLHLCDRCGRLFRQRYSLDNHLRRHQDNYPLTCKYCGKGFLHTRALQVHIRSHTGERPFICEYCGHQFSSEQNLIVHIRTCSGDLPFNCDKCDKRFATMSMLQNHKYLHHEGKHHLKCSECEKGFLKNSDLKVHMRSHTNEKPHTCKICGKRYRNIGNLNQHMKTHLEDKPFKCELCSEMFVRRAMLTEHIKRHSGVKDYNCELCEKKFLTRRNLQAHRKWHSGTLKRYTCQVCGKILNHGLSAHMRTHSGDKPYTCLQCDATFTVRSSLNKHMKKHNRKI*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01447812;
90% Identity: iTF_01447812;
80% Identity: -