Tdou016065.1
Basic Information
- Insect
- Timema douglasi
- Gene Symbol
- -
- Assembly
- GCA_901482245.1
- Location
- CABEEJ010001240.1:62530-82512[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.3 70 6.4 0.1 2 23 236 258 235 258 0.87 2 13 0.043 10 9.1 0.1 2 23 265 287 264 287 0.91 3 13 0.96 2.3e+02 4.8 1.2 1 23 305 327 305 327 0.89 4 13 0.029 7 9.6 0.9 3 23 332 352 330 352 0.95 5 13 1.8e-06 0.00044 22.8 0.3 1 23 357 379 357 379 0.95 6 13 0.41 97 6.0 0.1 1 21 387 407 387 412 0.90 7 13 4.1e-05 0.0096 18.6 0.8 1 23 419 441 419 441 0.95 8 13 1.9e-06 0.00045 22.8 0.8 1 23 447 469 447 469 0.98 9 13 0.00037 0.087 15.6 0.3 1 23 477 500 477 500 0.94 10 13 0.003 0.71 12.7 1.4 3 23 522 542 520 542 0.96 11 13 5.8e-06 0.0014 21.2 0.8 1 23 548 570 548 570 0.98 12 13 3.2e-06 0.00077 22.0 1.9 1 23 576 598 576 598 0.96 13 13 8.2e-06 0.0019 20.8 2.0 1 23 604 626 604 626 0.98
Sequence Information
- Coding Sequence
- ATGGATGTGCCCACGCTGAAGAAAAATGCTTTCCCGACCATATTCAACTTTACAGAAGACACATTATCAGACATGCACATGGATGAAGAGTTGATGGATTGTTCTGACATAGAAGAGATTTCAGAATCTGAAGATGAGGACTTTGGCAAAAACGAAGCCTTCTTGATTGAACATGGGGTGAAGCAGATCTGTCGAGTTTGTGGGAGCCCAACTGAAGAGGTGCTATATCCCATTTTCGGCCAACAAGGGGAAGTATGGAATATTGCCGAGAAAATCTCGCGCTGCCTCCCTATCAAAGTGATGCCGTCGGACAAGATATCTCTTTTAATCTGTGCTGAGTGTATCAATCTGCTCAACACTTCCTACGAGCTTATTGCCACCTCTCTACGGGCAGAGGCCGAGTTCCTCAAAGAGTACCCTGAGGACTGGTGGAACCGGACCTTGTTACCTTGCATCGAAGAAGAGGAGGAGGAAGATGATGATGAGAATGACGAGAATGATgaaaatgatgataatgatgatgatggtgactATGGCAATGAAAGTAAAGACTGCAATGTGAAAACTGAGCCCAACGAAGAGATCAAAGAAGAAATGTGTGGGGGAGCTCATGACTCTTTAAATGATCTAAGTGAAAATGGGGAGACAAAAGGATCTTCAGAGGCAGCCAACATGGGAAAGTCGCTGCACATCAATGGCCCAGTGACGTGTGACCTCTGTGGTTCCACATTCACAGACATGGAGTTGTTTGAGTTCCACATCATGGCGGACCACCGCTTAGAGTATCCCTGGCCGTGCCGGCTGTGCCATGAGGGCTACCAGGACCCGAGTGATCTGCTTGCTCACAAGCTAGCGGTTCATGCAGATGACTTGTCAACGTGTGACCAGTGTTGCCCGTCTGATGATCTGGAGTTTCACTGTGACATCTGTGGCTCAGTGTACCCCACTGAGCAGGAGGCCCAGGATCATTGCCTCACCCACTCCGTCCTTGCATGCAAGGTGTGTGGACTTCAGTGTGATTCATTGGAGGAACTAACCACACACAGTAAGAACCATCTGAAGGAGCGCTTCCTCTGTGGCCTGTGTGGCAAGGCATTCTCAAACCGTGCAGCACTCACTAACCACCAACGCTATCACTGTTGCAAGACCAAAAAGCCTTACTTGTGTTCGGCCTGCGACCGTGGCTTCTGGCGCCTCGAGAACCTCCAAGAGCACGCCAAGGTAACAACATCACATCTCGGGTTCTGGGATAAGTTCCGCTGTAACATCTGCAACCGGCCTTTCCGTAGCTCCATGGCACTGAAGAACCACAGTCTGCTTCATACCGGCAACAAGCCCTACCAGTGTGAGATTTGTGGACGCACTTATAACCGTCAAGCCAACatgGTGAAGCACCGCAAGCTGCACAAGCCACCTGCACAATGGGATCACGAGTGTGGTCAGTGCGGGGAGAAATTTGAGCGCCTGCGGGACTTGATGGTCCACTTAGAGAACATCCATCAGGTGATCAACGCCACCACTGACCCAGCCGTCAAGAGGAAACTTAACCCTGTCAAGTGGATCTGCCGCTTCTGTGGCAAGTGTATCTCCACCAAGCTCAGTCTGCAGGACCATGAGCGTATACACACGGGCACTAAGCCATATGTTTGTGAGTGGTGTGGGCGTGAGTTTCGCTCTCGCCCTAACCTCCTGCAGCATCACCTGACCCACACAGGTGACCGCAAGCATGCGTGTGGAGTGTGTGGCAAGCGTTTCTCCCGGAAGTCTTTCATCACACAGCACATGCGTGTCCACACGGGTGAGAAACCATTTGAGTGTGATGTGTGTGGCCATCGATTCACACAGGCGGGTGACATGCGGCGTCACCGCAAGCGCCACAGTGATGGCACTAGAAAGGAGAGGGTCGCGGTCATATTCCAGCTCAAGTGA
- Protein Sequence
- MDVPTLKKNAFPTIFNFTEDTLSDMHMDEELMDCSDIEEISESEDEDFGKNEAFLIEHGVKQICRVCGSPTEEVLYPIFGQQGEVWNIAEKISRCLPIKVMPSDKISLLICAECINLLNTSYELIATSLRAEAEFLKEYPEDWWNRTLLPCIEEEEEEDDDENDENDENDDNDDDGDYGNESKDCNVKTEPNEEIKEEMCGGAHDSLNDLSENGETKGSSEAANMGKSLHINGPVTCDLCGSTFTDMELFEFHIMADHRLEYPWPCRLCHEGYQDPSDLLAHKLAVHADDLSTCDQCCPSDDLEFHCDICGSVYPTEQEAQDHCLTHSVLACKVCGLQCDSLEELTTHSKNHLKERFLCGLCGKAFSNRAALTNHQRYHCCKTKKPYLCSACDRGFWRLENLQEHAKVTTSHLGFWDKFRCNICNRPFRSSMALKNHSLLHTGNKPYQCEICGRTYNRQANMVKHRKLHKPPAQWDHECGQCGEKFERLRDLMVHLENIHQVINATTDPAVKRKLNPVKWICRFCGKCISTKLSLQDHERIHTGTKPYVCEWCGREFRSRPNLLQHHLTHTGDRKHACGVCGKRFSRKSFITQHMRVHTGEKPFECDVCGHRFTQAGDMRRHRKRHSDGTRKERVAVIFQLK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01445898;
- 90% Identity
- iTF_01445898;
- 80% Identity
- -