Tdou013487.1
Basic Information
- Insect
- Timema douglasi
- Gene Symbol
- -
- Assembly
- GCA_901482245.1
- Location
- CABEEJ010000935.1:80464-82251[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 4.4 1e+03 2.7 0.0 3 23 139 160 137 160 0.90 2 15 0.1 24 7.9 2.4 2 23 166 186 165 186 0.95 3 15 0.00064 0.15 14.8 0.1 2 23 191 212 190 212 0.94 4 15 1e-05 0.0024 20.5 1.4 1 23 218 240 218 240 0.96 5 15 0.00092 0.22 14.3 1.7 3 23 248 268 246 268 0.95 6 15 0.0036 0.85 12.5 0.5 1 23 277 299 277 299 0.97 7 15 5.2e-07 0.00012 24.5 0.3 1 23 307 329 307 329 0.98 8 15 0.16 39 7.2 4.8 1 23 335 357 335 357 0.98 9 15 0.00014 0.032 16.9 0.3 2 23 390 411 389 411 0.97 10 15 0.00071 0.17 14.7 0.9 2 23 419 440 418 440 0.97 11 15 0.006 1.4 11.7 5.3 1 23 446 468 446 468 0.97 12 15 0.016 3.7 10.4 3.4 1 23 474 496 474 496 0.96 13 15 1.6e-06 0.00038 23.0 3.2 1 23 502 524 502 524 0.99 14 15 1.9e-05 0.0044 19.6 0.2 1 23 530 552 530 552 0.97 15 15 0.0042 1 12.2 1.6 5 23 561 579 560 579 0.97
Sequence Information
- Coding Sequence
- ATGAAACTAGAACCAGAAATTCAGATTAATGAAGATTCTGATGATTCAGATAAGTTTGGGGctggtgatgatggtgatgatgatgatgattatgatgatgatgatgtgggAGAGGAATACAGTGAAGAAATATCTGGAATCAAGGAAGAGAAAAATTACCAGAAAACgaaattaaatacttcaagATCTGATTCAATCACTTTTAGTCCACATGAACACCTCTCTAATGGCCTAAAGCCAAGTAAACATTCAGAACTGGACACAAGAGAGACGAccgaaataaagtttgttatagATCCGCTAACGTCTGTTCTCTCCGAGGAACATCAGACTGATGGGACTTCTATCAACCCAGAAATAGTGGCACTAGAATTAGCCAGCTCACCGGTGAGTACAGAAGAGCAGGGACTTGCCTGTGACGCTTGCCAAGCAGTGTTTCCAACTGTTCTCTCTTTGGTTACGCATAAGATGGACTCACACAAAACCACCAAAATGCGATGCAAGTATTGCAACACAGAATGTGACAAAGATCAACTAGAGACTCATGAAGACAGCCACAACCTACCGGTGGTGTGTCCTGTTTGTTGGAAAAGCTTCAGTTCAGACATTAGTttgaagcaacattttattcaacACAAAAGGGCAAACATTCACATCTGCACCTTGTGCGTGAAGGTCTTTCCAACCAAAAGTAAATTAAGGGCACACATGTCTAGTCATATGAAGGAGAAACGTCACTTGTGTGAGACATGTGGGAAGGAATTCAAATACAGGAATGCCATGATGCAACATGCTCAGACTCACTTGGATGatgaaaagagagagaaattcAAGTGTGATGTTTGCAATACTCTTTTCAAAAGCAAACCTATCCTTAAAAATCATATGGCTCTTCACAATGAAGCGAGGGAGAGTAAGTATGTATGTGAAATATGTGGTAAGAAGTTTTTTAAACCCTACAGCCTGAAGGTACACATTCAAGTTCATTATGACGAGCGCCCTTTCAAGTGCACATGCTGTGACATGGCATTCAAGTGGAAGAAGAACTTAGACAACCATAAAAGAACTCACGGGATTGGCGCTGACAGAAATGGAAAATCCATCAGACCTCCTAGGAATGGTAAGCCCCTTAAGGACAGACGGCCACGAGAGGTGATGCCTAGAGTGCAGTGTGAAATTTGTGGCAAGTCCCTTGCATCAAAGGCAAGTCTTCAGTTTCATATGAAACGTCATAACGGGATTGTGACGGAGCTTGTCTGCGAGATATGCGGTAAGACCATGTGTAGTTCCCAGGCAATGAACAGACACCTCAAGATCCATCAGGGCATCAAACCGTTCCAATGCAAGTTCTGTGGGCGCACGTTTCGTACCAAGATCTGCCGTGATGACCATGAGAGAACACATACCGGAGAGAAGCCTTTTCGCTGTGATTTCTGTGGCAAGTGTTTTGGCTGTAAACCTCTCCTGACAGTACACCGAGCCATCCACCTGGACTTACGACCATACACCTGTTCGTATTGCTCCAAGGCATTTAGGCGCCGGCCACATCTCGTGCAGCATGTTCGAACACACACAGGGGAAAAGCCCTTTGCTTGTGAGATCTGTTTACGTGCATTCGCCCAAAAAGGTGACATGACAAAACACATGCTGACCCACTCAGAAGAACGCCCCTTTATTTGTGAGTGTGGTGTGAGCTTTCGTCAGAAGAGGGACCTtgataaacataagaaaaaaCACACTGAAGGGGAGCCGAGCTTCCTGACCTCTTTGCAACAGCCCAACTTTTAG
- Protein Sequence
- MKLEPEIQINEDSDDSDKFGAGDDGDDDDDYDDDDVGEEYSEEISGIKEEKNYQKTKLNTSRSDSITFSPHEHLSNGLKPSKHSELDTRETTEIKFVIDPLTSVLSEEHQTDGTSINPEIVALELASSPVSTEEQGLACDACQAVFPTVLSLVTHKMDSHKTTKMRCKYCNTECDKDQLETHEDSHNLPVVCPVCWKSFSSDISLKQHFIQHKRANIHICTLCVKVFPTKSKLRAHMSSHMKEKRHLCETCGKEFKYRNAMMQHAQTHLDDEKREKFKCDVCNTLFKSKPILKNHMALHNEARESKYVCEICGKKFFKPYSLKVHIQVHYDERPFKCTCCDMAFKWKKNLDNHKRTHGIGADRNGKSIRPPRNGKPLKDRRPREVMPRVQCEICGKSLASKASLQFHMKRHNGIVTELVCEICGKTMCSSQAMNRHLKIHQGIKPFQCKFCGRTFRTKICRDDHERTHTGEKPFRCDFCGKCFGCKPLLTVHRAIHLDLRPYTCSYCSKAFRRRPHLVQHVRTHTGEKPFACEICLRAFAQKGDMTKHMLTHSEERPFICECGVSFRQKRDLDKHKKKHTEGEPSFLTSLQQPNF*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01445029;
- 90% Identity
- iTF_01445029;
- 80% Identity
- -