Tdou038454.1
Basic Information
- Insect
- Timema douglasi
- Gene Symbol
- -
- Assembly
- GCA_901482245.1
- Location
- CABEEJ010005504.1:16185-21119[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.3e-05 0.0031 20.2 0.4 2 23 417 438 416 438 0.97 2 10 0.013 3.1 10.7 0.4 1 23 448 470 448 470 0.97 3 10 6.6e-06 0.0016 21.1 0.6 2 23 532 554 531 554 0.94 4 10 0.049 12 8.9 0.9 1 23 639 662 639 662 0.94 5 10 1.1e-05 0.0027 20.3 1.5 2 23 704 725 703 725 0.97 6 10 2.1e-06 0.0005 22.6 0.5 1 23 731 753 731 753 0.98 7 10 2.2e-05 0.0052 19.4 1.7 1 23 759 782 759 782 0.96 8 10 1.3e-07 3.1e-05 26.4 0.7 1 23 788 810 788 810 0.99 9 10 1e-05 0.0025 20.4 4.4 1 23 816 838 816 838 0.98 10 10 6.5e-07 0.00015 24.2 0.7 1 23 844 866 844 866 0.97
Sequence Information
- Coding Sequence
- ATGTCAAGCTGTAGAGATCTGTTGTGTTGTAGAACAGTAGACACACTCAGACTGGCAACAATAGCAAACATGGAAGATTCTGGTGGGTTGCCGTCTGTGTCGGCCCATCGAGACTCCCAGTTAGTCTTAGACTCTATAGTCCCCAGCATCCGCTCTGAGGTGGTGAAGCTATGCGGCGCCGATCCAAGCAAGAGCAAACCAGTTGCGGATGTTGATGAACCGAGGGCTACCGAGCTCATCAGTACCCAGTACATCAACATCCATCGAGTGTCTGACGATGTCAGCCTGGATAAAGCTCTGCAGGTGGACAACACTGAGCTAATCCAGCACCACGTACTTCACGGAGGAATGGTGGTGGACATGATGGTGCCTGTTTCTGCTGGAACAGCGCCAGACTTCTCCCACGCCGCCCATCAGTACATCTCGGACCACTACGACACAGACGCTATCCTGACGGACCATCTCACCGAGGAAGACAAGAAGCTAGCGGCGGCGCTGGTGGCGGTGCAGCTCGTTCATCAACAGAAACACCACGTGGGGTCGGACTCCAACACCATCGTGAGCACGGCCGGACTGTCAGGGTTCACGTCTCCTGTGTCCGTGACGCGGCTCTCCAAGATGCACCAACACATACCGGTGTCTCTGGCCGACCACTCTCAGATAGCCTCACTGGGGGCCATGTCCCCGGTGTCTGTGACGCAACTCGCCAAGATGCACCAGCACATACCGGTGTCTCTGGCCGACCACTCTCAGATAGCCTCACTGGGGGCGATGTCCCCGGTGTCTATCGTGGACAAGCCCACAGTGTCGGCGATGGTGTCTAGTTTCATACAGGCTGTGGAGGAAGAGGTGGCGGTGCAACAGAGCCTGCTGGAGCATCACGGCGCCGACACACAGACAATGAAGCTGTACCAGCCACAACTTCCGCTTCCCCCACTCAAGAAGGTGCTCTCAAGTCATCCTATAGGCACCAGGAGGCCCCAGATAACCCCAAACCAAGTGACCACTCTGTCCGAGCAGCTCAAGGAGGAATATGGTATCAAATGTGAGGGCATGGACGAGGACCTCGGAGATGACAGCGAAGAGAATGGCCGTGACGAAGATGATGACAACGACTCAGACTTTGACCTGGAAACTCATCTGCGGCCGTCGCGGCGCTCCCTCCCTCACAAGAAGCGCATTTCTCGCAAGCTAAAGAACCTCAAGAAGGCGTCATCTCCTTCTCGAAGCATTCTCAACAAGTGTCTCAAGTGTAACAAGTGTGGGGAACAGTTTGTAAATCAAGCGGCATTAACCTCGCACCGACTCACGCACTTGCCTAGCGCCGCCAAGAAGCCCTCCTTCAACTGTGAGCTGTGCGGGAAGGCTATTGCCAATCAGCTCAAGTTCTTTGAGCACCTCAAGTCGCACTACGAGCCCGTCTTGTTGAATAATAATGACGAGGTGATCAACGACCTTGACGCTGTCCAGACAAGTTCCAAGCAAAACACTTCCAAAGAGTGTGTGCTTCCCCCTGTTAAGTCTGTCGAAGGAGGAGAGATAGAAGTGGGAAAGCCAGCGCCGGAGCTCGTGGGggccctccctcccccccttacATGCCCCCAGTGTGGCAAGACGTTCCGCCGCCAGAGGACGTTTGAGACGCACGTGAGTGTGGCTCATCCGAAGCAGGAGGAGATAGAGGAGTTCAGTGAACCCGAGGACTTGATGGAGGGTATTAGAGGGGTGGGGGTAGGGGTGGAAGACGACTCGGGTGATGACATGACCTGTCTACCGCCTGTCCGAGGACTCAAGCCGGGAGTGGACAAGGTATGGTACCGAGAGGAGGACCTCCACGCCACAGAGGTTGACCTGCAGGCTATAGAGGCACAGCACCATCAGGTGTCCCATGACGGACTCACCAGCGAGGAGGATCACATTTGCGAACTTTGCGGAGACATCTACGAGAGCCGGCATACTCTGACCCAGCATGTCAGGGCGGAGCACCTGGATCTCCACGACCGCCGCGACGGGATCATTATCCCTCTCAAGAGGAAAGGTGGGGGGCCCTTCTCAATGACAGGCAAGCACTCTAGGAGCTCACACAAGCGGGCTGGCTCCCTCACTCTGACCTGCCCCCAATGTGGGCGAGTGTTTAACCACCGCAACTCGCTGGTGTACCACCTGCGCTCGCATTCGGGCGAGCGGCCGCACCAGTGCGAGGTGTGTGGCAAGAGCTTCTTTGCTGCGAGTGCGCTCAAGGTTCACATGCGTCTTCACTCGGGGGACAAACCTTACAAGTGCGAGAGCTGCGGCCGCCACTTCAGGCAGTGGGGGGACCTCAAGTACCACCGCATCTCGATACACACGGCTCAGAGGAACTACCAGTGCGAATACTGCGGCAAGGACTTTGCGCGCAAATACTCGCTCATTGTGCACCGGCGCATTCACACCGGCGAGAAAAACTACTGCTGCGAGTACTGTAACAAGAGCTTCCGAGCCTCGTCGTACCTGCAGAACCACCGGCGCATTCATACAGGTGAGAAGCCTCATCCGTGCCCGGTGTGCGGCAAACCATTCAGAGTGCGGTCGGACATGAAGCGCCACCTCAACACCCACCAGCGAGACCGTGGGTCCCGAGGAGGGGGGACTCTGTCCTCCACCAAACTGGAAACTCCAGACGAGATGGAGGATGTGGACCAGGAGGAGCAGGCGGCCATCACAGGACTCGCGCAACATCACACCATGCAGGTACAAACACCACCATCACCACTTGAATGTTTGAATCGACAAATAGTGACCCCGGGTGCTAACTAG
- Protein Sequence
- MSSCRDLLCCRTVDTLRLATIANMEDSGGLPSVSAHRDSQLVLDSIVPSIRSEVVKLCGADPSKSKPVADVDEPRATELISTQYINIHRVSDDVSLDKALQVDNTELIQHHVLHGGMVVDMMVPVSAGTAPDFSHAAHQYISDHYDTDAILTDHLTEEDKKLAAALVAVQLVHQQKHHVGSDSNTIVSTAGLSGFTSPVSVTRLSKMHQHIPVSLADHSQIASLGAMSPVSVTQLAKMHQHIPVSLADHSQIASLGAMSPVSIVDKPTVSAMVSSFIQAVEEEVAVQQSLLEHHGADTQTMKLYQPQLPLPPLKKVLSSHPIGTRRPQITPNQVTTLSEQLKEEYGIKCEGMDEDLGDDSEENGRDEDDDNDSDFDLETHLRPSRRSLPHKKRISRKLKNLKKASSPSRSILNKCLKCNKCGEQFVNQAALTSHRLTHLPSAAKKPSFNCELCGKAIANQLKFFEHLKSHYEPVLLNNNDEVINDLDAVQTSSKQNTSKECVLPPVKSVEGGEIEVGKPAPELVGALPPPLTCPQCGKTFRRQRTFETHVSVAHPKQEEIEEFSEPEDLMEGIRGVGVGVEDDSGDDMTCLPPVRGLKPGVDKVWYREEDLHATEVDLQAIEAQHHQVSHDGLTSEEDHICELCGDIYESRHTLTQHVRAEHLDLHDRRDGIIIPLKRKGGGPFSMTGKHSRSSHKRAGSLTLTCPQCGRVFNHRNSLVYHLRSHSGERPHQCEVCGKSFFAASALKVHMRLHSGDKPYKCESCGRHFRQWGDLKYHRISIHTAQRNYQCEYCGKDFARKYSLIVHRRIHTGEKNYCCEYCNKSFRASSYLQNHRRIHTGEKPHPCPVCGKPFRVRSDMKRHLNTHQRDRGSRGGGTLSSTKLETPDEMEDVDQEEQAAITGLAQHHTMQVQTPPSPLECLNRQIVTPGAN*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01450840;
- 90% Identity
- iTF_01445869;
- 80% Identity
- -