Basic Information

Insect: Timema douglasi
Gene Symbol: -
Assembly: GCA_901482245.1
Location: CABEEJ010000935.1:20142-21893[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.012 2.8 10.9 0.3 1 23 136 159 136 159 0.90

2 15 7.6e-05 0.018 17.7 0.6 1 23 164 186 164 186 0.98

3 15 0.042 10 9.1 0.1 2 23 192 212 191 212 0.93

4 15 0.00037 0.089 15.5 0.1 1 23 218 240 218 240 0.95

5 15 0.0017 0.41 13.4 0.9 3 23 248 268 246 268 0.95

6 15 0.019 4.6 10.1 2.3 1 23 277 299 277 299 0.97

7 15 8.1e-06 0.0019 20.8 0.4 1 23 307 329 307 329 0.98

8 15 4.7 1.1e+03 2.7 3.6 1 23 335 357 335 357 0.97

9 15 3.5e-05 0.0084 18.8 0.2 2 23 379 400 378 400 0.98

10 15 0.0008 0.19 14.5 4.9 1 23 408 430 408 430 0.97

11 15 0.0054 1.3 11.9 3.2 1 23 436 458 436 458 0.98

12 15 0.0018 0.43 13.4 6.7 1 23 464 486 464 486 0.96

13 15 1.2e-06 0.00028 23.4 2.7 1 23 492 514 492 514 0.98

14 15 9.5e-06 0.0023 20.6 0.4 1 23 520 542 520 542 0.97

15 15 0.00034 0.082 15.7 1.4 5 23 551 569 549 569 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.012	2.8	10.9	0.3	1	23	136	159	136	159	0.90
2	15	7.6e-05	0.018	17.7	0.6	1	23	164	186	164	186	0.98
3	15	0.042	10	9.1	0.1	2	23	192	212	191	212	0.93
4	15	0.00037	0.089	15.5	0.1	1	23	218	240	218	240	0.95
5	15	0.0017	0.41	13.4	0.9	3	23	248	268	246	268	0.95
6	15	0.019	4.6	10.1	2.3	1	23	277	299	277	299	0.97
7	15	8.1e-06	0.0019	20.8	0.4	1	23	307	329	307	329	0.98
8	15	4.7	1.1e+03	2.7	3.6	1	23	335	357	335	357	0.97
9	15	3.5e-05	0.0084	18.8	0.2	2	23	379	400	378	400	0.98
10	15	0.0008	0.19	14.5	4.9	1	23	408	430	408	430	0.97
11	15	0.0054	1.3	11.9	3.2	1	23	436	458	436	458	0.98
12	15	0.0018	0.43	13.4	6.7	1	23	464	486	464	486	0.96
13	15	1.2e-06	0.00028	23.4	2.7	1	23	492	514	492	514	0.98
14	15	9.5e-06	0.0023	20.6	0.4	1	23	520	542	520	542	0.97
15	15	0.00034	0.082	15.7	1.4	5	23	551	569	549	569	0.97

Sequence Information

Coding Sequence: ATGCCTAATATTAAAGTAGAAggtgatattaaaatagttggAAGTTTAAGTAATTCAGAGGAATTTATTGTTGGACAAGATGGTGAAGATGAAACGGTAAAATATCGAAGTAGAAAAAAATTCGAGACCTCAGAATATGATTCATTCACTGCATGCAAACAAGAATCTTTATCAAACAGTTCAGAAAGTGGTGAAGATTCAAGCTTGCAGATAAATAACACTGAAGCTAAATACATTGGTAATTTGGAACAAGATATTTGTACGTCTGATGATGACAAATCAAGTAAAATAGCGAAATTGGAGAAAATTGCTCAAAAATCCACCCCACATCTTACTTTGATTGGTCCCCCTGGGTACACGAGGGTCAACAATTTTGTTGGTCTCCCTATTATAGCAGTAACCGCATTTAGCTGTGAAGTGTGCCACACAACATTTACTGATACTCTGGCACTTGCTGGTCATAAAATGGCAGCTCACAGTGCGAGCAAGTTCCAATGTAACTTTTGTGACCTTGagtttaataacaataatcagCTTGAAGAGCATGAGAAGATTCATAAAAGTCGGACTGTGGAGTGTCCGATATGTGGAAAAACTGTTGGTCCTCGTGGATTCAAACTTCATCTCaatcaacataaaaatacaaactcatTTGTCTGTGTTACCTGTGTAAAGGTGTTTCCAAATGAGAGTGAACTGAAAAGTCACACGTCTGCCCATTCTCATGAAAAACGACACTTGTGCGAAACGTGTGGCAAATCATTCAATATCAAAACTGCCATGATGGAACATGTTAAAGTTCATTTGAATGATGAAGataaagaaaagtttgaatGTGACACCTGTCACACTTTGTacagtagtaaaaatattttaaagagacaCATGATACTTCATGACAAGGCAAAGGAGAAAAAATATGCCTGTGAGACATGCGGTAAGACATTTTTTAAGCTGCCTAACTTGCGGTTGCACATTAAAGTCCATTCTGAGGACCGTCCTTTCAAGTGTTCTTGTTGCAGCATGGCTTTTAAGTGGAAGAAGAACTTGGACACCCACACAAGTATTCATGAACTTGGCACTGATAATCACAGTAAAGACAATGAAAGAATACGTAAAGCTACCCCTCGTGTGCAGTGCGAGGTTTGTGGAAAGTACCTTGCATCAAAATGGAATCTTTCAGTTCACATGAAGCGGCACAATGGTAACTTCACTGGCTCACACATGTGCCATATTTGTGGCAAAACTCTTTGCGACTCGCAGGCAATGAGCCGTCATCTCAAAGTTCACATGGGCATCAAGCCATTCGAGTGCAAAATTTGTAACAAGCATTTTGGCACAAAAATGAGTCGGGATGACCACGAAAGGACCCACACAGGAGAGAAGCCTTTCTGTTGTGACTTGTGTGGTAAATGTTTTGGGTCCAAGCCACATCTCCATGTTCACCGGGCTATCCACTCGGACGAGCGTCCTTACCATTGCCCGTATTGTCCAAAAGCTTTCAGGCGACGCCCACATCTTGTGTTACATGTCCGCACGCACACTGGAGAGAAACCGTTTGCTTGTGAAGTGTGCTCACGAGCATTTGTACAGAAAAACGACATGACTAAGCATATGCTCACACACTCAAGCGAGCGACCATTTGTTTGTGAATGTGGTGTAAGCTTCCGGCAGAAGAGAGATCTTAATAGACACAAAAAGAAACACACTGATGTAGATCCAAATATTTTAGCTGTAATTCAATGtgtataa
Protein Sequence: MPNIKVEGDIKIVGSLSNSEEFIVGQDGEDETVKYRSRKKFETSEYDSFTACKQESLSNSSESGEDSSLQINNTEAKYIGNLEQDICTSDDDKSSKIAKLEKIAQKSTPHLTLIGPPGYTRVNNFVGLPIIAVTAFSCEVCHTTFTDTLALAGHKMAAHSASKFQCNFCDLEFNNNNQLEEHEKIHKSRTVECPICGKTVGPRGFKLHLNQHKNTNSFVCVTCVKVFPNESELKSHTSAHSHEKRHLCETCGKSFNIKTAMMEHVKVHLNDEDKEKFECDTCHTLYSSKNILKRHMILHDKAKEKKYACETCGKTFFKLPNLRLHIKVHSEDRPFKCSCCSMAFKWKKNLDTHTSIHELGTDNHSKDNERIRKATPRVQCEVCGKYLASKWNLSVHMKRHNGNFTGSHMCHICGKTLCDSQAMSRHLKVHMGIKPFECKICNKHFGTKMSRDDHERTHTGEKPFCCDLCGKCFGSKPHLHVHRAIHSDERPYHCPYCPKAFRRRPHLVLHVRTHTGEKPFACEVCSRAFVQKNDMTKHMLTHSSERPFVCECGVSFRQKRDLNRHKKKHTDVDPNILAVIQCV*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01450830;
90% Identity: iTF_01450830;
80% Identity: -