Tdou032282.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Timema douglasi
Gene Symbol
-
Assembly
GCA_901482245.1
Location
CABEEJ010003877.1:40225-51267[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.00069 0.16 14.7 0.4 1 23 384 407 384 407 0.97
2 14 0.00046 0.11 15.2 1.1 2 23 432 453 431 454 0.94
3 14 0.0014 0.33 13.7 0.5 3 23 461 481 460 481 0.97
4 14 0.00042 0.1 15.4 4.2 1 23 487 509 487 509 0.98
5 14 4.8e-07 0.00012 24.6 0.7 2 23 516 537 515 537 0.96
6 14 1.3e-05 0.0032 20.1 0.7 3 23 545 565 544 565 0.99
7 14 3.3e-06 0.00078 22.0 1.4 2 23 572 593 571 593 0.94
8 14 0.00049 0.12 15.2 1.0 1 23 599 621 599 621 0.98
9 14 9.5e-06 0.0023 20.6 2.5 1 23 627 649 627 649 0.98
10 14 0.1 24 7.9 0.6 1 23 664 686 664 686 0.97
11 14 0.0029 0.7 12.7 0.1 1 23 693 715 693 715 0.97
12 14 5.7e-06 0.0013 21.3 0.7 1 23 721 743 721 743 0.96
13 14 1.1e-05 0.0027 20.3 1.1 1 23 749 771 749 771 0.98
14 14 2.6e-07 6.2e-05 25.5 1.4 1 23 777 799 777 799 0.98

Sequence Information

Coding Sequence
ATGAGTAATCGTAGATGTGCTGCAAGAACGTGCTTTAATATGCAAGGATGTCGTCctaaccttaaattatttccatttCCTAAGGATGAAATAGCAATGCGGGAATGGGCGAAAAACTGTGGCAGATCAGATCTCTGTAAACTTCCCTCTGAAAAACTGAGCAAATTCCGTCTGTGTGCCAACCACTTTGAATTGCACTGGTTTCTTAACCCCAAATACAAGACAAGGTTCAAGCCTTCTCTCCAGCCTATcccaacaatattttacaataaccTGAGAGATTTTGTCCCAAAATCTCTGCAAAATTCGTGTCCGCTTTCGAACGAAGTTCAGAAAATTGATGAAAACATTGAAGAAGTTCTCCAGCTCGAAATTCCTACAGAAGCCAACAGATCAGAAGTTTTGAGTGCATGCAGTGTGGTGTCTGACATCAGCGAAAAGATGTGCCGGCTATGCGCACAGTTGGTGCAAGAGTCTAAGTTGATTGACATCTTTTCACAGGAGGAGACCGATCTTGTCTCAAAAATCAACAAGTTCTTGCCAGAAAAGATATCGGTGGAAGACGGCCTGCCAGCTCACGCGTGTACTTCGTGTGTCCACAAGTTGAATGATTGTGACGAAGCTGTCTCGCTATTCATTTCTGCGGACAGGAAGCTGAGGACTCTTTTTCATAATGTTGATGAAAGTACTTCACAAATTCTGGACAAGATACCTGTCATCATTGATGAGGACCACCGGCTGCCCGTTCGATTGGAGACATTTGGGGGCTCAGAGCAAACCTACACAATCACTAATGCAGATAATTTGCCAGTTCAGTATATTGATGAGGAGTTTCAAGATCAGTTATCACAAAATGGCAGTAAAGTctatgtgatatttaaaaaagattttgtgGCTTCAGACATAAATGCTGAAGATTCAAGACCAGGAAGTATGTTCGAAGGCGAAGAGTTTGAAGTGCTCAGCCGGGAGGAACTTGAGTCAAGAGAGGCAGAGGGTTGCTGTGAAAACGAGGAGAATTGTGACTATGTGCAGGGAGATTTCGGACATCTCGTCAGCGTATCTCTTGGTAGGGAGATGGAAGCCGAAACAGCACCAGCTGAAGATGGAGTAGTCATCAAGAACATTTCAACAACTGAGGTTAAACAATATAGATGCTTAAACTGTGATCAAACCTTTAATGAAAATAGTAAGTTATTGATTCATGAAATAACTGAACACATTGTTGAAAAACAAACCAAGGCTAATAATGAGTCGCTCGTGTCCCACATACGATACAGACGAGAGAAGATGGAGTGCAAGGAATGTGGAAGTGTATTTAATGGGAGGAAGCCTTTGAAGAAACACATTCGAGAGCATCACATCCCAGCAGAGAATATTTGTCCCTTCTGTGGTgctcactataaaataaaaagtcaattGCTTGTTCATCTCCGTTTACACACAAACGAAAAACCGTTTGTGTGTTCTGTTTGCACTGAAACATTCCACTTCAAAAAAGAGCTCCGGAGGCACAAACGTATTCATCTCGTATCAAAATCATTGATGTGCCATATCTGTGATAAGTCATTCACCAACAGGGCAGCTTTGTGGCGACATGCCAGGATTCACACCATCAACAGGAACGTACTTTGCTCTCAGTGCGGTAAAATTCTCTCCAACTCACAGTCTCTCAGAGTGCACATGAGGACTCACTCAAGTGACCGTCCCTGCTCGTGTCCCACATGCGGGAAAAGTTTTAAGGACAATGCTTCTCTCACCAGGCACGAAGTTATGCACTCTGCTTTGAGGAATTTCAGGTGTGATATATGCCAGCGAGCGTTTTATAGCAAAGCTCTGGTGAAACAGCATAAGTTGAGTCACTCTGGTGTAAAACCTCACAAGTGCAACGTGTGTGGCGCATCCTTCAACAGGCTGGGCAACTTGAACCAGCACAAAAAAAAGCATATTGACTCAGACGGGAAGAATGAGTCCAAGAATGAGATTGCTTACGAGTGTGTAGTCTGTAACAAACGAATGCGATCCGAGCTGACCCTTAAATATCACCTTGCAAAACACACCGGGGAAAAGAAACCATTTGATTGTACGGCTTGCGGCAAACGATTTACTGCAATAGAGCCGTACCGCGTACACATGCGTATCCATACAGGGGAGCGTCCATATGTCTGCAACACATGTGATAAGGATTTTCGCAGCGCTTATACGCTTAAGCAGCATATGGGGCTTCACAAAGACGAGTGCCCGTACCCTTGTCCATTTTGTGAGCGACGGTTCAAGAGGTTGCAGTCGCTCATTGTTCACAAGCGTACACATACGGGAGAGAAGCCTCATCAGTGTCCAGAGTGCGGCCGGCGCTTTGCTCAGAAAGGTGATATGTTGAAGCACATGAAGACTCACTTTCGAGACCAACCTTATTTGGGCAGCCAAGTCCCCGAGGAAATGGTTCTGGAGATAGACAATATTGCAGAGTTTGCGCTCAGTGACACAGACATGACCAACGAGTTTCTCATCGACATGCCCATTGTAGAGGTGGAAACAGAGTTGCACTGA
Protein Sequence
MSNRRCAARTCFNMQGCRPNLKLFPFPKDEIAMREWAKNCGRSDLCKLPSEKLSKFRLCANHFELHWFLNPKYKTRFKPSLQPIPTIFYNNLRDFVPKSLQNSCPLSNEVQKIDENIEEVLQLEIPTEANRSEVLSACSVVSDISEKMCRLCAQLVQESKLIDIFSQEETDLVSKINKFLPEKISVEDGLPAHACTSCVHKLNDCDEAVSLFISADRKLRTLFHNVDESTSQILDKIPVIIDEDHRLPVRLETFGGSEQTYTITNADNLPVQYIDEEFQDQLSQNGSKVYVIFKKDFVASDINAEDSRPGSMFEGEEFEVLSREELESREAEGCCENEENCDYVQGDFGHLVSVSLGREMEAETAPAEDGVVIKNISTTEVKQYRCLNCDQTFNENSKLLIHEITEHIVEKQTKANNESLVSHIRYRREKMECKECGSVFNGRKPLKKHIREHHIPAENICPFCGAHYKIKSQLLVHLRLHTNEKPFVCSVCTETFHFKKELRRHKRIHLVSKSLMCHICDKSFTNRAALWRHARIHTINRNVLCSQCGKILSNSQSLRVHMRTHSSDRPCSCPTCGKSFKDNASLTRHEVMHSALRNFRCDICQRAFYSKALVKQHKLSHSGVKPHKCNVCGASFNRLGNLNQHKKKHIDSDGKNESKNEIAYECVVCNKRMRSELTLKYHLAKHTGEKKPFDCTACGKRFTAIEPYRVHMRIHTGERPYVCNTCDKDFRSAYTLKQHMGLHKDECPYPCPFCERRFKRLQSLIVHKRTHTGEKPHQCPECGRRFAQKGDMLKHMKTHFRDQPYLGSQVPEEMVLEIDNIAEFALSDTDMTNEFLIDMPIVEVETELH*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01446669;
90% Identity
iTF_01445732;
80% Identity
iTF_01446669;