Tdou001943.2
Basic Information
- Insect
- Timema douglasi
- Gene Symbol
- -
- Assembly
- GCA_901482245.1
- Location
- CABEEJ010000073.1:418218-428789[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.14 33 7.5 1.8 1 23 4 26 4 26 0.96 2 20 0.00061 0.15 14.9 0.2 2 20 33 51 32 54 0.91 3 20 0.0017 0.39 13.5 4.8 3 23 62 82 62 82 0.99 4 20 0.00086 0.2 14.4 2.8 1 23 88 110 88 110 0.97 5 20 0.024 5.6 9.9 6.5 2 23 117 138 115 138 0.95 6 20 0.0071 1.7 11.5 0.4 1 23 144 166 144 166 0.96 7 20 3.8 8.9e+02 3.0 0.2 2 12 177 187 176 196 0.67 8 20 2e-05 0.0048 19.5 1.2 1 23 201 223 201 223 0.95 9 20 1.8e-06 0.00042 22.9 0.3 3 23 231 251 230 251 0.98 10 20 1.5e-07 3.6e-05 26.2 2.4 1 23 257 279 257 279 0.98 11 20 0.22 52 6.8 1.2 1 13 285 297 285 298 0.93 12 20 0.00042 0.1 15.4 0.1 2 19 346 363 345 364 0.94 13 20 0.0028 0.67 12.8 0.7 1 23 373 395 373 395 0.95 14 20 3.4e-07 8.1e-05 25.1 1.1 2 23 402 423 401 423 0.97 15 20 2.8 6.5e+02 3.4 7.0 2 23 430 451 427 451 0.93 16 20 6.7e-05 0.016 17.9 0.3 2 23 458 479 457 479 0.96 17 20 1.3 3e+02 4.4 1.1 2 20 490 505 489 508 0.76 18 20 0.001 0.24 14.2 0.6 1 23 514 536 514 536 0.95 19 20 6.5e-07 0.00016 24.2 0.6 2 23 543 564 543 564 0.97 20 20 5e-07 0.00012 24.6 1.6 3 23 572 592 570 592 0.97
Sequence Information
- Coding Sequence
- atgaAAACATTCAAATGTAAGATCTGCGACCAAATATCTGAAAGTTCTAGAGAGAGACATGTTCACACATTGTCTCACAAGGAGACAAACGGTTGGATCTGCCCCACTTGCAAAAGGAACTTCGCAACAAAGGCGTACTTGCTGCGCCATTTGCCGAGTCACGTGCTCGAGAGGAACCTTGGCTGCGAGACGTGCGGTCGcaaatttagaaaacatttcgAGCTGCGATCTCATAAAAGAATTCACACTGGAGAAGGTGTGTACAAATGTATCCAATGTGGCAAATCATTTGTCCACAAGAGTATTCTGAATAGCCACTTGAGGTACCACGCCAAGGAATATTCGTGTTTTTGCAACATTTGCGGTAAGGGCTACCACCATAAAAGTCAACTCGACGAGCATTCGAATAAACATACAGGAGAACGATCCTTCCCGTGCGATATATGCGGTAAGAGCTACTTACTCAAAAGAAGTTTGGCTTACCACAAGAAAGTTCACACGGGAGAGAACAAAAACACGGTAAAACAAGAGTGTGGAATCTGCGGCAAGTTATACGTGAACATTTCGAAACACTTGTACCGCCACACGGGGGAACGTAACTTTCTCTGCGACTTTTGCGGCAAGAAGTTCAACAATAAAGAATCGTTGCTACTTCACGGAAGGACCCATACAGGGGAGAAACCGGAAATCTGCGGTGTTTGCGGTAAGATGTTCGCCCGGATGACTACTCTGCGTGTTCACATGCGCACCCATACAGGAGAGAAACTTTACAGCTGTAACGATTGCGGCAAGAGGTTTACTCAGAGCAGCACGCTCACCATACATAAACGCTACCATACGGGAGAGAGACCGTACCACTGTGAGGTCTGTGAGAAAGAGTTTACCAGACAATTCGTAATATACAAAGTTCTTGCTATTGGTGCAAACAGCGAAACTCAACCAGATTCTTTAAATAAAGCTCAGAACAAAGAATTTGGGAAATCGGCCGAACAAAAAGCTCACACGTTATCTCacaaagacaataataataactgggTCTGTCCGGTTTGCCTCAAAAAATTTGCGACCAAGAGGAACTTGCTACGCCACGTTCCGTGCTACGGCGCCGGAAAGAACTTTCCGTGTGAGGTCTGCGGTCGCAAGTTTAGAGCACCCTCGGCGCTTGAATGCCATAAAAAGTTGCACACGGGAGACGATGTCCTCACGTGCGACAAGTGTGACAGAGTTTTTAACAGAAAGAGCTCGTTGATCAAGCACTTGAAAATTCACTCCAAGGAATATTCGTGTTTCTGTGATTTTTGCGACAAAGGTTTCTACTGTAAGAACCAGCTTTTGTATCATAGAAATAAACACACGGGCAAGCGGCCTTTAGTGTGTGACATTTGCGACAAGGCCTATATGGTCAGGAGTAGTCTGCATGCCCACATGAGCATGCATAGAGGAGAGAAACAGAAGAGGAAAAAACAAGAGTGTGAAGTTTGTGGCAAGTTTTATGCGAATTTGTTGGTTCATTTGAGATGTCACACGGGGGAACGTAACTTTTTGTGTAATTTGTGCGGTAAGaacttttatgaaaaacaaactCTGCTGCTTCACGGACGAATCCACACCGGAGAGAAACCGGAAGTCTGCAGCTTGTGCGGCAAGATGTTCGCCCGGTTGACGACCCTGCGCATTCACATGCGCACGCATACGGGAGAGAAACTTTACGGGTGTAAAGATTGCGGCAAGAGGTTTACCCAGAGCAGCACGCTCACCATACATAGACGCTACCATACGGGGGAGAGACCGTACCACTGTTCTTGTTCCACAATTTCAACCCCCACCCCGCAGACAGGAGGACTGAGCATCGAGGGTTTTAATCCCACCCAAGTGTACTGa
- Protein Sequence
- MKTFKCKICDQISESSRERHVHTLSHKETNGWICPTCKRNFATKAYLLRHLPSHVLERNLGCETCGRKFRKHFELRSHKRIHTGEGVYKCIQCGKSFVHKSILNSHLRYHAKEYSCFCNICGKGYHHKSQLDEHSNKHTGERSFPCDICGKSYLLKRSLAYHKKVHTGENKNTVKQECGICGKLYVNISKHLYRHTGERNFLCDFCGKKFNNKESLLLHGRTHTGEKPEICGVCGKMFARMTTLRVHMRTHTGEKLYSCNDCGKRFTQSSTLTIHKRYHTGERPYHCEVCEKEFTRQFVIYKVLAIGANSETQPDSLNKAQNKEFGKSAEQKAHTLSHKDNNNNWVCPVCLKKFATKRNLLRHVPCYGAGKNFPCEVCGRKFRAPSALECHKKLHTGDDVLTCDKCDRVFNRKSSLIKHLKIHSKEYSCFCDFCDKGFYCKNQLLYHRNKHTGKRPLVCDICDKAYMVRSSLHAHMSMHRGEKQKRKKQECEVCGKFYANLLVHLRCHTGERNFLCNLCGKNFYEKQTLLLHGRIHTGEKPEVCSLCGKMFARLTTLRIHMRTHTGEKLYGCKDCGKRFTQSSTLTIHRRYHTGERPYHCSCSTISTPTPQTGGLSIEGFNPTQVY*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -