Basic Information

Insect: Timema douglasi
Gene Symbol: -
Assembly: GCA_901482245.1
Location: CABEEJ010000073.1:172499-180065[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 26 1.1 2.5e+02 4.7 1.1 6 23 2 19 1 19 0.96

2 26 0.0042 1 12.2 2.3 1 23 25 47 25 47 0.95

3 26 0.0017 0.4 13.5 1.6 1 23 53 75 53 75 0.98

4 26 0.017 4.1 10.3 2.9 1 23 81 103 81 103 0.95

5 26 0.032 7.6 9.5 0.6 1 23 109 131 109 131 0.94

6 26 6.3e-05 0.015 18.0 0.4 2 23 142 163 142 163 0.96

7 26 2.7e-06 0.00064 22.3 0.3 1 23 170 192 170 192 0.98

8 26 3.2e-06 0.00076 22.0 2.5 1 23 198 220 198 220 0.97

9 26 0.0083 2 11.3 2.1 1 20 226 245 226 247 0.92

10 26 0.0027 0.65 12.8 2.9 1 23 329 351 329 351 0.98

11 26 0.0029 0.69 12.7 0.7 1 23 357 379 357 379 0.95

12 26 2.8e-05 0.0067 19.1 2.3 1 23 385 407 385 407 0.98

13 26 0.045 11 9.0 4.3 1 23 413 435 413 435 0.96

14 26 0.016 3.7 10.4 2.2 1 23 441 463 441 463 0.94

15 26 9.4e-05 0.022 17.4 4.9 2 23 473 494 472 494 0.97

16 26 9.6e-06 0.0023 20.5 0.3 1 23 501 523 501 523 0.98

17 26 4.4e-07 0.0001 24.8 0.8 1 23 529 551 529 551 0.98

18 26 2.3e-05 0.0055 19.3 5.9 1 23 557 579 557 580 0.96

19 26 0.13 30 7.6 2.6 2 23 643 664 642 665 0.88

20 26 9.4e-05 0.022 17.4 1.1 3 23 672 692 671 692 0.95

21 26 0.00044 0.11 15.3 2.9 1 23 698 720 698 720 0.98

22 26 0.00016 0.037 16.7 4.2 3 23 739 760 737 760 0.95

23 26 1.3e-05 0.0031 20.1 1.9 2 23 770 791 770 791 0.96

24 26 1.1e-05 0.0025 20.4 0.1 1 23 798 820 798 820 0.99

25 26 5.7e-07 0.00014 24.4 1.2 1 23 826 848 826 848 0.98

26 26 9.5e-06 0.0023 20.6 3.0 1 23 854 876 854 877 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	26	1.1	2.5e+02	4.7	1.1	6	23	2	19	1	19	0.96
2	26	0.0042	1	12.2	2.3	1	23	25	47	25	47	0.95
3	26	0.0017	0.4	13.5	1.6	1	23	53	75	53	75	0.98
4	26	0.017	4.1	10.3	2.9	1	23	81	103	81	103	0.95
5	26	0.032	7.6	9.5	0.6	1	23	109	131	109	131	0.94
6	26	6.3e-05	0.015	18.0	0.4	2	23	142	163	142	163	0.96
7	26	2.7e-06	0.00064	22.3	0.3	1	23	170	192	170	192	0.98
8	26	3.2e-06	0.00076	22.0	2.5	1	23	198	220	198	220	0.97
9	26	0.0083	2	11.3	2.1	1	20	226	245	226	247	0.92
10	26	0.0027	0.65	12.8	2.9	1	23	329	351	329	351	0.98
11	26	0.0029	0.69	12.7	0.7	1	23	357	379	357	379	0.95
12	26	2.8e-05	0.0067	19.1	2.3	1	23	385	407	385	407	0.98
13	26	0.045	11	9.0	4.3	1	23	413	435	413	435	0.96
14	26	0.016	3.7	10.4	2.2	1	23	441	463	441	463	0.94
15	26	9.4e-05	0.022	17.4	4.9	2	23	473	494	472	494	0.97
16	26	9.6e-06	0.0023	20.5	0.3	1	23	501	523	501	523	0.98
17	26	4.4e-07	0.0001	24.8	0.8	1	23	529	551	529	551	0.98
18	26	2.3e-05	0.0055	19.3	5.9	1	23	557	579	557	580	0.96
19	26	0.13	30	7.6	2.6	2	23	643	664	642	665	0.88
20	26	9.4e-05	0.022	17.4	1.1	3	23	672	692	671	692	0.95
21	26	0.00044	0.11	15.3	2.9	1	23	698	720	698	720	0.98
22	26	0.00016	0.037	16.7	4.2	3	23	739	760	737	760	0.95
23	26	1.3e-05	0.0031	20.1	1.9	2	23	770	791	770	791	0.96
24	26	1.1e-05	0.0025	20.4	0.1	1	23	798	820	798	820	0.99
25	26	5.7e-07	0.00014	24.4	1.2	1	23	826	848	826	848	0.98
26	26	9.5e-06	0.0023	20.6	3.0	1	23	854	876	854	877	0.96

Sequence Information

Coding Sequence: ATGTGCGATAAAGAGTACAGCTGTGAAAGTGCTCTCCGGCAACACAAGAAGCGACACACAGAAGACAGACCGTTTGTGTGCGCAAGGTGTGACAAAAGGTTTAAACGTCGGTGCGAACTCGACGTCCACAACTCTGTTCACAGCGGtgttttcaaatacttttgtGATCTTTGCAACTATGTTTCAAACCGCAAGGGGAATCTGGATTCTCACCGCAAACGGCATTTCAACAAGTTTACGCACACTTGCGATACTTGTCTGAAAGGGTTTCATTCTAAATCAGCGCTGCAAGAACACAGCGCCAGTCACACTGGTGTGAAACCGTTTCTTTGCGATGTCTGCGGGTGGGGTTTCTTAAACAGATACTCGATGACAAAACACAATATGAAGCACAATCCTTCTTACAAACCAGACTACAAAAACAAATGCGCCGCCTGCGGGAAGGGGTTTGTGTCTCGAGAGAACTTGTCCATGCACATGAAGCGGCACGCGGGCGAATCGCCAGACTACGTGTGCGACATTTGCGGTAAGGTCGTGACGACCCGCCAATCTCTCAAATTGCACCGGCGAATACACACAGGAGAGAAGCCTTTCGCTTGTTCGGTGTGTAATAAAACGTTCAGTGACATTAGCTATCTGAAGGTTCATCACCGGACTCACACGGGCGAGCGGCCGTTCGTTTGTGACTTGTGTGGGAAACGTTTCACCCAGAGGTGCACAAAGAATATTCACTTAAGCTATCTCGAAAACTACGACTCCTTGGATGGTCTTGTCGCATTAAGTGAGATAGAGAGAATAAACTTTCCTGTCACATTATGGCACAAACCAAAGTCACAAAGCTCCGCCTTTGTAGGAATCAATAACGATTCCAACGGAAACATCATAGGGGAGGGGAAACATCCTGACGCTACTGCTCTTGAGAAGTCAATCTCGGACAAAATGATTGGAAAGGGGGATGAGCGCCTGCAGCATGATACTAAACCATTCAAATGTGAAATGTGTTATAAAGAGTTTGATTCGACCGTCAAGTTCATGCGCCACCAATCGCGCCACAACGACTTGAGACCTTTTTCCTGTACAGTGTGCCACATGAAATTCAAAGCAAACGGAGCTCTCAAGAATCATGCCGTTGTCCATTCTGGCACGTTCAGCTATTCTTGCGACAAGTGTAACTATGTCTCGAACAGGAAAGGGAACTTACAGACTCACCAAAAGAAGCATTTGGGGTACTTTTCTCATTTCTGCGACTTTTGCCAGAAAGGTTTCCACTCAAAGTTTGCCTTAGTGGAGCATAGAAATGTCCACACGGGGTTAAAACCGTTCCTTTGTGATATCTGCGGGATGTGTTTCTTGAGGAAAGACAGGCTCCGAGCGCATAACATGAAGCACCGGTCCGAGTATAAGCCGTGTGTGAAAGAATGTGACCTGTGTCACAAAGTTTTTGTGCACAGAAACAGTCTGAAGAGGCACATTAGTCGGCACATGAGTAAAACTCCCGAGTATGTCTGCGACGTTTGCGGGAAGTGCGTTGCAACTGCTGCCTCCTTGAGGACGCACAAGAGGATACACAGCGGAGAGAAGCCTTTCGTATGTAACTTTTGCGGGAAACCCTTCAGTGACAATAAGTATTTGAGCGTTCATTTACGCACACACACAGGAGAACGCCCATACACCTGCACATACTGCGACAAAACGTTCACTCAGAGATCTTGTCTCTTGGGTCATATTAAGTTACATCACGTGCCAAAGTGGACAGACGATACTAGGTTTAGTTATCGCGTGTTGCCACACTGGATGCACGACAAAAATAATCCTAGTTCACGCAAAACAAAAGATAGAAGAACCATTAAGGCTTCAGCTAAAGTGAAAAGTCGAAAGACTGCCGTCGCAAAGAGGTTGAAAAAGAAACTCAATCCTGGAAGGTTCGATTGTGTACCGTGCAACAAGAGCTACTCCTTGAAGAGGACATTAGATCGACACAAGAGGGAACATCATGAAGAGAGAGTGAACGCGTGTAACACGTGTGGCAAACGGTTCAAGACCAGACAGACGCTCAAGTACCACTTAGCAGGGCACGTTGCCGAGTTCAAGTATTCCTGTCACCTGTGCAATTACGTCACCAACAGGAATAACTATCTAACGGTGCACATCAAGAACCACGACAGGTTCCCCGTTAAATTGCCGCAAGACGCGAGCAAGATGGACTCTCATCTGTGCGAGACTTGCGGTAAGTCCTTCCCGACCAAGCACGGTGTCAAGAGGCACATGTTCACAACGCACAACGCGGACTACCGGCCACCGCCCGCGACCTGTGACATTTGTCAGAAGGAGTTCACCTACAAGAAGACGCTCAAGAGACACATGGCGCAACACACGGGCATCCTTCCCGAGTACGTGTGCGACATGTGTGGCAAGGTCGTGAGGTCGGGAGAGTCGCTCAAGGCCCACCGGAGGACGCACACGGGCGAGAAACCGTTTTCTTGCAAAATGTGCGGTAAGGCGTTCACCAGCAGCCAGTATGTCACtgtgcacatgcgcacacaCACGGGTGAACGTCCATATATTTGCCAAGTGTGTGGGAAGAGCTTCACTCAGAGACCATGTCTTGTCGGTCACATGAAGACCCACCATTCACAGAAGACTCTGACATTGGCTGTGTCATAG
Protein Sequence: MCDKEYSCESALRQHKKRHTEDRPFVCARCDKRFKRRCELDVHNSVHSGVFKYFCDLCNYVSNRKGNLDSHRKRHFNKFTHTCDTCLKGFHSKSALQEHSASHTGVKPFLCDVCGWGFLNRYSMTKHNMKHNPSYKPDYKNKCAACGKGFVSRENLSMHMKRHAGESPDYVCDICGKVVTTRQSLKLHRRIHTGEKPFACSVCNKTFSDISYLKVHHRTHTGERPFVCDLCGKRFTQRCTKNIHLSYLENYDSLDGLVALSEIERINFPVTLWHKPKSQSSAFVGINNDSNGNIIGEGKHPDATALEKSISDKMIGKGDERLQHDTKPFKCEMCYKEFDSTVKFMRHQSRHNDLRPFSCTVCHMKFKANGALKNHAVVHSGTFSYSCDKCNYVSNRKGNLQTHQKKHLGYFSHFCDFCQKGFHSKFALVEHRNVHTGLKPFLCDICGMCFLRKDRLRAHNMKHRSEYKPCVKECDLCHKVFVHRNSLKRHISRHMSKTPEYVCDVCGKCVATAASLRTHKRIHSGEKPFVCNFCGKPFSDNKYLSVHLRTHTGERPYTCTYCDKTFTQRSCLLGHIKLHHVPKWTDDTRFSYRVLPHWMHDKNNPSSRKTKDRRTIKASAKVKSRKTAVAKRLKKKLNPGRFDCVPCNKSYSLKRTLDRHKREHHEERVNACNTCGKRFKTRQTLKYHLAGHVAEFKYSCHLCNYVTNRNNYLTVHIKNHDRFPVKLPQDASKMDSHLCETCGKSFPTKHGVKRHMFTTHNADYRPPPATCDICQKEFTYKKTLKRHMAQHTGILPEYVCDMCGKVVRSGESLKAHRRTHTGEKPFSCKMCGKAFTSSQYVTVHMRTHTGERPYICQVCGKSFTQRPCLVGHMKTHHSQKTLTLAVS*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -