Tdou001907.1
Basic Information
- Insect
- Timema douglasi
- Gene Symbol
- -
- Assembly
- GCA_901482245.1
- Location
- CABEEJ010000073.1:163073-170584[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 1.1e-05 0.0026 20.4 2.0 1 23 86 108 86 108 0.97 2 26 0.00015 0.035 16.8 3.1 1 23 114 136 114 136 0.97 3 26 0.00091 0.22 14.3 1.6 1 23 142 164 142 164 0.98 4 26 0.011 2.6 10.9 5.1 1 23 170 192 170 192 0.96 5 26 0.0029 0.69 12.7 0.4 1 23 198 220 198 220 0.95 6 26 0.00087 0.21 14.4 6.1 1 23 229 252 229 252 0.98 7 26 5.9e-05 0.014 18.1 0.9 2 23 261 282 260 282 0.96 8 26 2.4e-07 5.6e-05 25.6 0.4 2 23 289 310 288 310 0.97 9 26 3.6e-07 8.6e-05 25.0 1.8 1 23 316 339 316 339 0.97 10 26 0.0039 0.92 12.4 3.3 2 23 411 432 410 432 0.97 11 26 2.1e-05 0.0051 19.5 2.2 1 23 438 460 438 460 0.98 12 26 3.4e-05 0.0082 18.8 2.2 1 23 466 488 466 488 0.98 13 26 3.7e-05 0.0088 18.7 2.0 1 23 494 516 494 516 0.96 14 26 0.0016 0.38 13.6 0.4 1 23 522 544 522 544 0.95 15 26 0.00048 0.11 15.2 3.9 1 23 554 576 554 576 0.98 16 26 1.1e-05 0.0027 20.3 0.2 1 23 584 606 584 606 0.98 17 26 0.012 2.9 10.8 0.1 2 17 613 628 612 629 0.90 18 26 2e-05 0.0048 19.5 1.6 1 23 692 714 692 714 0.98 19 26 0.0066 1.6 11.6 6.6 1 23 720 742 720 742 0.98 20 26 0.0051 1.2 12.0 3.0 1 23 748 770 748 770 0.98 21 26 9.1e-05 0.022 17.5 1.5 2 23 777 798 776 799 0.94 22 26 0.0032 0.77 12.6 0.7 1 23 805 827 805 827 0.95 23 26 3.7e-06 0.00088 21.9 0.2 1 23 837 859 837 859 0.98 24 26 7.2e-06 0.0017 20.9 1.9 1 23 866 888 866 888 0.98 25 26 2.1e-05 0.0049 19.5 1.3 1 23 894 916 894 916 0.98 26 26 3.1e-06 0.00075 22.1 1.2 1 23 922 945 922 945 0.97
Sequence Information
- Coding Sequence
- ATGTTGGTGCCACAGTCTTCAACTGTAGAAAATATTCTACTACCCCAATCGCCAAAAGAAGAAGATATGTCGGTACAGCAGTTgtcagaagaagaagaagaagaagaggaggaaGAAGGAGATGAAAATATGATCTTACCACACATGCTCGAGGACGATAGGGATATGTACTGTGTTGATATGGAGCAAGAGTCAATTTTCACTTCCATTGCTAGTCCTAAAGAAAAGAGTGCAACGTCTCGCAAACCCGTGATTCATAAGTGCACAATTTGCGGTAGAGAGTTCAACAGGAAAAATGGTCTAACGAGACACAAGGCAGTGCACAGCGCTATTCGTCCTTACGAGTGCCCCACCTGTGACAAACGGTTCAAGAGAAAATGTGAACTAGACCTCCACAAAGTAACACACACCGACGCTAAACAGTATGCCTGTGATATATGCAGCCTGGTGTGCAACCGGAAAGGTAATCTTGACTCGCATCGTAAGAGACATTTCAACGCGTTCACTCATTTCTGTAGCGTGTGTACCAAGGGGTTCTACGACAGTTTCACCATGAAGAGCCACAAGAGGACACACAACAAACTGAAACCTTTCCTTTGTGATCTGTGTGGCTGGAAATTCACGACCGGCGCTCAGATGGCGAAACACAAGCTTAAACACGCCCCCGGTTACAAGTCCGAGCTGTTTAGGTGCGACGACTGTGATAAGTGTTGCCTGACAAAGTCAAATTTGATGTCGCACGTCAGACGGAGACACGCCGCCGAGGTGGTACCTCAGTGTATTTGCGACATTTGCGGTAAATCGTTATCCTCTAAGGAGTACCTCGTACTTCACAGACGCATACATACGGGAGAAAAACCACTGTCTTGCGATGTGTGCGGAAAGGCGTTCACTCAAGCCAAGTATCTGAAAGTTCATCAGCGCACCCATACGGGAGAGAGACCATTCTCTTGTAACGTCTGTGAGAAACGTTTTACCCAGCGAAGCAGTTTAAATGCACACATGAAATCATACCACAAGTGCACTAAACTGCTTAACCTAAATTACCGTGCCTTCCACGACGACTGTTTTGTTCCTTCCAAAGAGATAACACCAAAAACAGCCACGTCTTCCATTGATCGTATAAGTTTGGCTCATGTCAAAGAAGAGACCATTGAGGAACTCACCGTAGTTTCAACGTTAAAGTGTGAAACTTATCCGTTGGACTTGACGCATCAGATTCCCACAAATAAATGTGACATTTGTAACAAAACATATCACAAGAAATCTGATCTCGACTatcataaaataacacacagcGATGTTCGTCCATTCGAGTGCTCCGTTTGTAACAAAAGATTCAAGAGAAAATATGAAGTGACTGTCCACAAGTTGACGCACACCGGTGACCTGAAATACTCGTGCGATATCTGTAACTTTGTGTGCAACCGGAAAGGGAATCTCGAGGCTCATCGCAAGAGACACATGAACGAGTTTGACCATTTCTGTGATATATGTGGTAAAGGATTCTACAACAATTTCAACTTGCAAGGACACAAAAGAGTGCATATCGGGTTGAAACCTTTCCTCTGTGATCTGTGCGGTTTGGGGTTTTCATACAAAGCGGCCATGAAAAAACATAAACTTAGTCACAATCCCGGGTACAAGCCCAAACCAAAACACGAGTGCGACATTTGCGGCAAATGTTTCCTGTCAAAGTCGAGGCTATCGGTGCACATTAAGCGGCACTATGGGGAGGAGTCGCCCGGGTTTATTTGCGACTTTTGTGGCAAAGCGGTGTCGTCGAAAGACTCGTTGGTGACCCATCAGCGCATACATACTGGGGAGAAGCCCCTGTCTTGCGATATTTGTGGGAAGGCGTTCAGCCACGTTAAGTCGTTGAaagatatttatcttaattGTGTGAGAAGCTCGGCCCGCTGCTCCCAAGACGTAGGGGCTTCTAAATTATCAGTTTCACAAGAAACGGAGGATGTCGAGGATGTTGTCAAATTTATTGTGATTCCGAGTAAAAGGGGCTCCTCTAAGTTAATATCTATAGACAATGTTGTTTCTCTCAATTCTTGCCAACCTTTCATCTGCGATGTGTGTCATAAAGAGTATGTTTCAATCGACTCTCTCCGCAGACACATGAAGAGGCACAGAGAGGAGCGACCCTTCACGTGCAACATATGTAGGAAATGTTTCAAATGCAAGAGTGAGCTGGTCTCCCACCAGACGGTGCACAACGGAAACTTCAAGTTTCGCTGCGAGTTTTGCCGGTATGTGTCGAACCGTAAGACCAACCTAGTGTTACACCGGAAAAGGCATCTGAAGCAGTATTCCCTCAGTTGCGACATATGTAGAAAAGAGTTCTATTCCAAAGGGGATTTGAGGGAACATATCAGCAGACACCACTCTGGTATCAAGCCTTTCCTGTGCGATATCTGCGGCTGGGGGTTCATCAGCCACTACGCCATGTCGCAGCACAAAATGAAACACGCCCCGGACTATAAACCGGCGCACAGGTTCGTGTGTGACTCGTGCGGCAAAGGTTTCATCTCTAGAGGGAACCTGAAGGTGCACATAAAGCAGCACACCGGGGGCTCTCCGGAATACATCTGCGACTTTTGCGGCAAGGTCCTGTCGACTCGGGACTCGCTGAAGCATCACCGGCGAGTGCACACCGGAGAGAAACCTTTTGTTTGTTCGGTGTGCGGCAAAGCTTTCAGTGCTAAGAAATATCTGGACGTTCACCACAGGACACACACGGGGGAGCGACCGTACTCGTGTGAGCTCTGTGGTAAGAGGTACACTCAGAGGTCCACTCTACAGAATCATAAGAAAGTGGCTCACTCAAGTTAG
- Protein Sequence
- MLVPQSSTVENILLPQSPKEEDMSVQQLSEEEEEEEEEEGDENMILPHMLEDDRDMYCVDMEQESIFTSIASPKEKSATSRKPVIHKCTICGREFNRKNGLTRHKAVHSAIRPYECPTCDKRFKRKCELDLHKVTHTDAKQYACDICSLVCNRKGNLDSHRKRHFNAFTHFCSVCTKGFYDSFTMKSHKRTHNKLKPFLCDLCGWKFTTGAQMAKHKLKHAPGYKSELFRCDDCDKCCLTKSNLMSHVRRRHAAEVVPQCICDICGKSLSSKEYLVLHRRIHTGEKPLSCDVCGKAFTQAKYLKVHQRTHTGERPFSCNVCEKRFTQRSSLNAHMKSYHKCTKLLNLNYRAFHDDCFVPSKEITPKTATSSIDRISLAHVKEETIEELTVVSTLKCETYPLDLTHQIPTNKCDICNKTYHKKSDLDYHKITHSDVRPFECSVCNKRFKRKYEVTVHKLTHTGDLKYSCDICNFVCNRKGNLEAHRKRHMNEFDHFCDICGKGFYNNFNLQGHKRVHIGLKPFLCDLCGLGFSYKAAMKKHKLSHNPGYKPKPKHECDICGKCFLSKSRLSVHIKRHYGEESPGFICDFCGKAVSSKDSLVTHQRIHTGEKPLSCDICGKAFSHVKSLKDIYLNCVRSSARCSQDVGASKLSVSQETEDVEDVVKFIVIPSKRGSSKLISIDNVVSLNSCQPFICDVCHKEYVSIDSLRRHMKRHREERPFTCNICRKCFKCKSELVSHQTVHNGNFKFRCEFCRYVSNRKTNLVLHRKRHLKQYSLSCDICRKEFYSKGDLREHISRHHSGIKPFLCDICGWGFISHYAMSQHKMKHAPDYKPAHRFVCDSCGKGFISRGNLKVHIKQHTGGSPEYICDFCGKVLSTRDSLKHHRRVHTGEKPFVCSVCGKAFSAKKYLDVHHRTHTGERPYSCELCGKRYTQRSTLQNHKKVAHSS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -