Basic Information

Insect: Timema douglasi
Gene Symbol: -
Assembly: GCA_901482245.1
Location: CABEEJ010000757.1:49696-51848[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 1.9e-07 0.00011 24.1 0.0 4 42 17 54 14 57 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	1.9e-07	0.00011	24.1	0.0	4	42	17	54	14	57	0.92

Sequence Information

Coding Sequence: ATGCGGAACTACAAGAGGAAGTCTGATCGAGGTAAAACTGATGTTGATGTATTGGAGAAAGCAGCTCAGCTTGTGAGAGAGGGAACATCCATCAGACAATGTGCAAAAAGTTACAACATCTGCCATGTGACCCTTACAAGATACAtctcaagaaaaaataaacGAGCAAATGAACCTAGGCCTGATCCTGAAGTGGACTGGAAGCCTCTGGCTGGATATTATGGAAACAGACAGGTTTTCACTCCAATACAGGAGACTGCTCTCGTTACTTACATCGAAACTTGCTcggatatttattttggactcACGCCACGCGATTTGCGATGTATTGCCTACCTGTGTGGGAAGCACTACAATGTTACGATGCCAAAAACCTGGAGTGACAATGAAACAGCTGGTGCAGACTGGCTCTCATCATTTTTAAAGCGTCATCCTTCATTATCAATTCGAACTCCGGAGGCTACTAGTATAGGCCGAGCATCCAGCTTCAACCGTGCCaatgtttcaaagttttttGATAAACTTTCTGAAGTTTACGACAGGTATTCATTCACTGCAAATGATGTTTGGAACATGGACGAAACCGGAGTCACCACTGTTCAAAATCCTTCAAAAATTATTGCAAGAAAAGGTATAAAACAAATAGGAGCAATGACTTCAGCTGAAAGAGGACAACTTGTTACGTTAACCGTTGCTGTCAATGCTGCTGGAAATGCTATTCCTCCAATGTTCATCTTTCCCAGGGTAAGATTTTATGACCACTTCATCAGAGATGGtccaacaggttgcataggtaCTGGAAATAAATCTGGGTGGACAACAGAAACAGAATTTCTGATTTTTCTGAATCATTTTGTTGATTGTGTTCGTCCTTCTCAAGAGAGGCCTGTCCTTCTTCTCCTAGACAACCATCAGTCGCATTTAGCTCCAAAATGTCTTGATTTTGCTAAAACTAATGGGGTTGTAATGCTTTCCTTTCCTCCTCATTGCACTCATCGCCTCCAGCCACTAGATCGAAGTGTTTTTGGACCACTTAAAAGACAAATAAACATAGCAATGGACGCTTggattagaaataataaaaccccGGATGGTACCGTTAGGCCTATGACAATATTCAACATTCCATCCGTTTTAAAAGTAGCATTTCCGATTGCCACAACACCAACGAATATTCAACATGGATTCCAGAAATGTggaatatttccttttaataggGAAGTATTTCAGGATGCGGACTTCTCCCCCTCATTTGTGACGGACAGGCCAAATCCAGAGACATCACCAGATCCACGTAATGAGGCATCTCCTGGAAGATCACTAGTTCTGGACAGACCCATCACACCAATTTCTGGTTCAACTAGAACCAATGAGTTTTCTACCAATCCGGTAGGAGTTGCTGGTCCATCCAGGGCTAATAATATCTCCCAAAATATGGCCAAGTTTTCCCCGGAGCTAGTTCAGCCCCTTCCAAAATCAGCTCCAAGAAAAACAAAGGTTGGGAGGAAAACCAGGAAAAGTGCCATTTTGACAGATACTCCTGAGAAGAACGCACTTGAAGAAGAATATGAAAAACGACCAAAAAAGGGAGTGGTTAAGAGGAAGATAAAACTGAGTAGTCCAAAGCAAGCTAGGGCCAAAACGTCTGCAAGGAATAAATTAGATCCAGGAAGCTCGTCAGAAGAAGAGAGTGAATGTTTCTGTTTAGTGTGTTTGGAACCATTCTCTTCCAGTAAACCAGGCGAGGAGTGGGTTCGCTGTTTGGACTGTCAGCTGTGGTCACATTTTTCTTGTGCAAAGAAATCAAAAATGTACATTTGTCACAATTGCCAGTCAGATGGACTGTCGGAGTAA
Protein Sequence: MRNYKRKSDRGKTDVDVLEKAAQLVREGTSIRQCAKSYNICHVTLTRYISRKNKRANEPRPDPEVDWKPLAGYYGNRQVFTPIQETALVTYIETCSDIYFGLTPRDLRCIAYLCGKHYNVTMPKTWSDNETAGADWLSSFLKRHPSLSIRTPEATSIGRASSFNRANVSKFFDKLSEVYDRYSFTANDVWNMDETGVTTVQNPSKIIARKGIKQIGAMTSAERGQLVTLTVAVNAAGNAIPPMFIFPRVRFYDHFIRDGPTGCIGTGNKSGWTTETEFLIFLNHFVDCVRPSQERPVLLLLDNHQSHLAPKCLDFAKTNGVVMLSFPPHCTHRLQPLDRSVFGPLKRQINIAMDAWIRNNKTPDGTVRPMTIFNIPSVLKVAFPIATTPTNIQHGFQKCGIFPFNREVFQDADFSPSFVTDRPNPETSPDPRNEASPGRSLVLDRPITPISGSTRTNEFSTNPVGVAGPSRANNISQNMAKFSPELVQPLPKSAPRKTKVGRKTRKSAILTDTPEKNALEEEYEKRPKKGVVKRKIKLSSPKQARAKTSARNKLDPGSSSEEESECFCLVCLEPFSSSKPGEEWVRCLDCQLWSHFSCAKKSKMYICHNCQSDGLSE*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01450497; iTF_01450498; iTF_01450499; iTF_01450500; iTF_01450501; iTF_01450502; iTF_01450503; iTF_01449550; iTF_01450484; iTF_01446520; iTF_01446523; iTF_01448443; iTF_01446524;
90% Identity: iTF_01450497; iTF_01450498; iTF_01450499; iTF_01450500; iTF_01450501; iTF_01450502; iTF_01450503; iTF_01449550; iTF_01450484; iTF_01446520; iTF_01446523; iTF_01448443; iTF_01446524;
80% Identity: iTF_01446523;