Tdou050199.1
Basic Information
- Insect
- Timema douglasi
- Gene Symbol
- -
- Assembly
- GCA_901482245.1
- Location
- CABEEJ010011008.1:5305-5715[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.3e-08 4.4e-05 25.4 0.0 5 38 12 45 9 47 0.91
Sequence Information
- Coding Sequence
- atggCTCCAAGGAAAAAATGGGATCTAGAACTAATGAAGGCGGCAGTTGCGGCCATGCACAATAAGGAAATGGGAAGTCTTAAAGCATCCCGTGTCTTTCATGTTCCTCAAACTACACTAGAGCACTACGTTAAGGATTTAGATAAATGTCCTAGTGACGTGGTTCAAACCAAAATAGGCAGGAAGCCAACACTACCCTTTGATTTAGAAAAGGATCTCGCAGACTACTGCCTTATTATGGAAAACAGATTCTTCGGCCTTTCTCAAAGGGATGTTCGTCGCATGGCATATCAGCTTGCTGTAAAAAACGGAATTTCGAACCCCTTCTCCAAAAAGAATGAGCAGGCCGGGAAAAAATGGATGAAGAATTTCTTAAGAAGAAATCTACAGCTTGCTGTGCGCACTCCTTAA
- Protein Sequence
- MAPRKKWDLELMKAAVAAMHNKEMGSLKASRVFHVPQTTLEHYVKDLDKCPSDVVQTKIGRKPTLPFDLEKDLADYCLIMENRFFGLSQRDVRRMAYQLAVKNGISNPFSKKNEQAGKKWMKNFLRRNLQLAVRTP*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01449454;
- 90% Identity
- iTF_01446476; iTF_01449428;
- 80% Identity
- -