Tdou023468.1
Basic Information
- Insect
- Timema douglasi
- Gene Symbol
- -
- Assembly
- GCA_901482245.1
- Location
- CABEEJ010002235.1:57805-59315[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.1e-08 1.3e-05 27.1 0.0 1 43 15 58 15 59 0.95
Sequence Information
- Coding Sequence
- ATGCCAcgaaaatttatttgtataagtaATCGCCAAAATTGGTCCGAGGAGAATATGGCGAAAGCAAGTGATGAAGTTATTCAAGGAAATATGAGCTATAAGAAGGTATCTTTTGATTATGATTTACCTCAGTCGACTCTTGAAGATCGTGTAAAAAAAGCCAAAATTGAAGCTTCAGTAGAAGTAGCAGCTATAAAAGggATGGGAAACTTCAAATGTGTGTTCACCGAGAACCAAGAAAGGGAACTTGTAGAGCATATAAAGTTCATGGAGATCCCCTTGTTTGGTCTCACAACGAAAGATGTAAGGCGTCTTGCTTACGAGTTAGCTGAGAAAAACGGACTCAAACATAATTTCAACCTCGAGGAGAAACTTGCAGGACCTGATTGGCTAAGTTGTTTTATGAAACGTCATCCTGATCTGTCACTCAGAAAACCGGAAGCAACTTCAGCTGCACGGGCAATGGGGTTTAATAAAACCgctgtttcaaaattttatgaaattctGGCCAGCTGTTTTGAAACCTACAAATTCCAACCAGGACGTATCTATAACGTTGATGAAACGGGAATAACATCTGTGCCTAAAACACAGTCTAAAGTTTTGGCCCAGAAAGGCAGCAGGCAGGTTGGTGCTCTGACGTCAGCAGAGCAAGGACAATTGGTAACGACGGAGCTTTGTTTCTCGGCAGCCGGACATTATGTTCCACCATTATTGATATTCCCAAGAATAAGAATGAAGGAAGAACTTATTGAAGaatggaTGCAGCCCTTTATCAGTAACGCAAAACCTTCGAAAGACGAACCAGTTCTTCTGTTGCTTGATGGACATGCAACACACGTCAAAAACTTGGCAGTTATTGACATTGCTCGTGACAATGGGATCATAATACTTTGCTTTCCGCCACATTGTACCCACAAGCTTCAGCCGTTAGACGTAAGCTTCATGGCTCCTCTAAGCACTTTTTATGGACAGGAAGTGAAGACATGGCTCCGTAACCATCCAGGGAGAGTGGTAACACAATATCAGATCGCCAAATTGTTTGGGTTGGCTTACATACGAGCAACAACCATGCAAAATGTTATTTCCGGGTTTCAGAAGACCGGGATTTATCCACTAAATCCAAATACGTTCGGAGAAGAAGTATATGCTCCAAAAGACACAACAGAAAGAACTTCTGAAAAAGAGAGTGTAAATCCTGAAACAGATTGTGAGTCTAAACCTGGACCACCTTGTGAGCCTCAACCTGGACCTTCTTGTGAGCCTCAGCCTGGACCACCTTGTGAGCCTCAACCTGGACCTTCTTGTGAGCCTCAGCCTGGACAATTTTGTGAGCCTCAACCTTGA
- Protein Sequence
- MPRKFICISNRQNWSEENMAKASDEVIQGNMSYKKVSFDYDLPQSTLEDRVKKAKIEASVEVAAIKGMGNFKCVFTENQERELVEHIKFMEIPLFGLTTKDVRRLAYELAEKNGLKHNFNLEEKLAGPDWLSCFMKRHPDLSLRKPEATSAARAMGFNKTAVSKFYEILASCFETYKFQPGRIYNVDETGITSVPKTQSKVLAQKGSRQVGALTSAEQGQLVTTELCFSAAGHYVPPLLIFPRIRMKEELIEEWMQPFISNAKPSKDEPVLLLLDGHATHVKNLAVIDIARDNGIIILCFPPHCTHKLQPLDVSFMAPLSTFYGQEVKTWLRNHPGRVVTQYQIAKLFGLAYIRATTMQNVISGFQKTGIYPLNPNTFGEEVYAPKDTTERTSEKESVNPETDCESKPGPPCEPQPGPSCEPQPGPPCEPQPGPSCEPQPGQFCEPQP*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01450472; iTF_01450469; iTF_01450470; iTF_01450471; iTF_01446410; iTF_01450422; iTF_01449401; iTF_01446409; iTF_01450400; iTF_01450403; iTF_01447419; iTF_01448379; iTF_01447420; iTF_01450399;
- 90% Identity
- iTF_01450472; iTF_01450469; iTF_01450470; iTF_01450471;
- 80% Identity
- -