Basic Information

Insect: Timema douglasi
Gene Symbol: APN1
Assembly: GCA_901482245.1
Location: CABEEJ010003856.1:31422-41201[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 7.3e-09 4.4e-06 28.6 0.0 1 38 8 45 8 46 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	7.3e-09	4.4e-06	28.6	0.0	1	38	8	45	8	46	0.96

Sequence Information

Coding Sequence: atggCTCTAAGGAAAAAATGGGATCCAGAACAAATGAAGGTGGCAGTTGCGGCCATGCGCAATAAGGAAATGGGAAGTCTTAAAGCATCCCGTGTCTTTCATGTTCCTCAAACTACACTAGAGCGCTACGTTAAGGATTTAGATAAATGTCCTAGTGACGTGGTTCAAACCAAAATAGGCAGGAAGCCAACACTACCCTTTGAATTAGAAAAGGATCTCGCAGACTACTGCCTTATTATGGAAAACAGATTCTTCGGCTTTTCTCAAAGGGATGTTTGTCGCATGGCATATCAGCTTGCTGTAAAAAACGGAATTGCGAACCCCTTCTCCAAAAAGAATGAGCAGGCCGGGAAAAAATGGATGAAGAATTTCTTAAGAAGAAATCTACAGCTTGCTGTGCGCACTCCTCAAGGTCTCTCAATGGCCCGAGCAAAGAGTTTCACTCCAGAGGGAGTTTCCAagttttttgacatttttgaacCTGCAATGGACAGTATCAATAATTCTCCATCTAGGTTATACAACTGTGACGAAACCGGCATATCAATTGTACAACATAAGCACACAAAAGTTGTGGGTCTAAAGGGAAAGCGACAAATTGGAGCACTTCAAGCGGCTGAACGAGGGGCTCTTATAACTGTTGTCACTTGTATGAGCCCTGCAGGCCACTTTGTTCCTCCATTAATGATCTTCCCTCGAAAGAACATGAAGATGGAACTCATGGATGGGGCTCCCCCTGGCTCTATTTATTCTTGCCATCCGTCTGGCTGGATACAAACGGACATATTTACAGATTGGTTTCGTCACTTTATTTCCAGCGTGAAGCCTACTGTGGAGGATCCTGCAATTCTCGTATTAGATGGCCACAACTCTCACACGAGAAATATAGATGTGATAAACATGGGGCGAGAGAATTATGTGGCCATTGTGTGTTTGCCCCCCCATAGCACTCACAAAATGCAGCCTCTCGATGTCTCATTTATGGGGCCTTTTAAGACGTACTACGCCCAGAAAGTTGAGCAGTGGATTCGAAAAAATCCTGGACGAGTGGTCACTGTCTACCAGATAGGGGACATTTTTGGAAAAGCGTACATGAGGGCAGCGACTGCTGAAGCGGCTGCTAGTGGTTTCCGCAAAACTGGATTGTTTCCTTGTAATAGGAACAACTTCCGACCTCATGATTTTGCTGTCCTTGAAGAGCCTGAAGAGAACAACGCTGAGAGCACACAACAGCTCGATGACCTGCAGGAGCCTCAACCAGGGACATCCCATGATCCTGATCCTGTTCCTATAACAACGCCACCTCAGATAAGGCTTATCCGGGCGTCTAACATCAAATCAGTTCCCTCTATAAAAATTCAGCCTACTACAAGAAAGTCCCGAACTGGATCTGCCCAGCTCATCACCGGATCACCTTATAAACAACAGCTATCAGAGTCGCAGAAAAAGGGTCCTTTACCAAAGAGAAACGGTAAGACTACGACTATCAAGAAACGCTCTGAATTGAAAACACCAGTTTACCGTCGTAAGAAAAGGGCTGCCAAACATTCGGAATCTTCAACAGAATCTGAGGATAATATTTCACTAGTTGATTCTGATGACGATCTTGATTTGGAAAGTGAAAGTGAATCTGATGCAGAGTGTATTATTTGTGCAGGATTATTTTCTGATGACCATGAAGGTTTCTACCGAGTGAACTACGATGATACCAACTGGAACCTGATCATCTCTTTCCTGAACAGTGACCAGTTCACTGATATCCACGTGTTGCTACCTCTGTACAGGTTTCTACAGAGTTTCTACCGAGTGAACTACGATGATACCAACTGGAACCTGATCATCTCTCACCTGAACAGTGACCAGTTCACTGATATCCACGTGTTGAACCGAGCTCAGCTATTGGACGACTCTCTGAACCTCGCCAGGGCTGGGATACTCGACTACAACACAGCCCTGAACCTTACTTTGTATCTGACCAGGGAAACAGATTACATCCCATGGTACACAGCATTGAGCAGCTTCACGTTCCTGGATAGGAGACTACGAGGGTTGGGTGACACTGAGTATAGCTACTTCAAGGACTACGTCTTGAGGATCATGGAGACAGCTGGACAAGTCCTTGGTTTAAGTGAGGAAACCAATGAATCACTCGTCACCAAACTTCACCGGAATCAGATCCTCACTTGGCAATGTAACTTTGGCGTGCAGAGTTGCATCGATATGGCATCAAGTGAGCTTGTCAAGCTAATGGATGACCCTGACAATTATTTagTTGCACCTGATCTGAAGACCGTAGTCTACTGCAACGCTCTCCGCTACGGTGGTGAGGAAGAATGGAACTTCTTGTGGAACCGTTACCTCACTCATAATGTCAACACGGAACAAGTTCTTATTCTGGGAGTTCTGGGGTGTACCAGGAATGAAACACTGGCTCACAGCAATGGTGGAGTGGACCTGCTAGCAACCATTTTGACTGGCATTGCCGATCATGTGTCAACCAGAGATCAAGCTGAAGAGATAAGGAGTTTCATAGAAGAGAACCAAGCCAACCTAGGCACCGCATTGGGGGCGTCCCAACGAACGCTGGAAACCGTTGAGGAAAACCTCGCCTGGCTTGACCAGAATGGTGGGGAAATCTCCAACTGGCTCAGCGTATCTCTCCCTTCCACGACGCCAGCGCCTCCTTTAACGACGCCCCCCGGTGGGGCAGGTAGTTTCTCCGCCAGTGTCGTTGCCATTACTGTATCCCTGATTATGACTTGCGTCAGATTTGTGTAA
Protein Sequence: MALRKKWDPEQMKVAVAAMRNKEMGSLKASRVFHVPQTTLERYVKDLDKCPSDVVQTKIGRKPTLPFELEKDLADYCLIMENRFFGFSQRDVCRMAYQLAVKNGIANPFSKKNEQAGKKWMKNFLRRNLQLAVRTPQGLSMARAKSFTPEGVSKFFDIFEPAMDSINNSPSRLYNCDETGISIVQHKHTKVVGLKGKRQIGALQAAERGALITVVTCMSPAGHFVPPLMIFPRKNMKMELMDGAPPGSIYSCHPSGWIQTDIFTDWFRHFISSVKPTVEDPAILVLDGHNSHTRNIDVINMGRENYVAIVCLPPHSTHKMQPLDVSFMGPFKTYYAQKVEQWIRKNPGRVVTVYQIGDIFGKAYMRAATAEAAASGFRKTGLFPCNRNNFRPHDFAVLEEPEENNAESTQQLDDLQEPQPGTSHDPDPVPITTPPQIRLIRASNIKSVPSIKIQPTTRKSRTGSAQLITGSPYKQQLSESQKKGPLPKRNGKTTTIKKRSELKTPVYRRKKRAAKHSESSTESEDNISLVDSDDDLDLESESESDAECIICAGLFSDDHEGFYRVNYDDTNWNLIISFLNSDQFTDIHVLLPLYRFLQSFYRVNYDDTNWNLIISHLNSDQFTDIHVLNRAQLLDDSLNLARAGILDYNTALNLTLYLTRETDYIPWYTALSSFTFLDRRLRGLGDTEYSYFKDYVLRIMETAGQVLGLSEETNESLVTKLHRNQILTWQCNFGVQSCIDMASSELVKLMDDPDNYLVAPDLKTVVYCNALRYGGEEEWNFLWNRYLTHNVNTEQVLILGVLGCTRNETLAHSNGGVDLLATILTGIADHVSTRDQAEEIRSFIEENQANLGTALGASQRTLETVEENLAWLDQNGGEISNWLSVSLPSTTPAPPLTTPPGGAGSFSASVVAITVSLIMTCVRFV*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -