Tdou022228.1
Basic Information
- Insect
- Timema douglasi
- Gene Symbol
- -
- Assembly
- GCA_901482245.1
- Location
- CABEEJ010002054.1:8292-9711[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-08 8.7e-06 27.6 0.1 2 34 39 71 38 78 0.90 2 2 3.7 2.3e+03 0.7 0.0 19 31 100 112 99 117 0.84
Sequence Information
- Coding Sequence
- ATGACGTTGTTTCCTAAGTTGGACCAGTCTAATTTAGGGATGCATGAACACAGAACATTGCCTAATCTTTTCTCAATCAAACGTGTTGCACAGGAAAATGTCAAAGAGTGGAGTGACACAGATTTGGCTTTGGCTGTGAACAAGGTTCATTCAGCAAGCGTTGGGCTGAATAAAGCAGCAAGAAGGTATGGAGTTCCAAAAGCTGCATTGAAGAGTCAAATTAGTGGGCAAAAGAAAGGACCTCTGCCCATGATAAATCCTTCGCTCAGCCGCTCGTCTTCACCGAGGCAAAATGCTCTGAGGCAAGCAGCTGATGTCAATAACGTACCAACACCACCATTAAAAAGTTCCTCTGAATCTCTGAGTAAAGTATTTCCAGTGTCTCAGGCAGCAAATGGTTCCAgcaaacaaagaaaacaaaagaatgccCAGTTCATCATAAATACTTCTTGA
- Protein Sequence
- MTLFPKLDQSNLGMHEHRTLPNLFSIKRVAQENVKEWSDTDLALAVNKVHSASVGLNKAARRYGVPKAALKSQISGQKKGPLPMINPSLSRSSSPRQNALRQAADVNNVPTPPLKSSSESLSKVFPVSQAANGSSKQRKQKNAQFIINTS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -