Basic Information

Insect: Timema douglasi
Gene Symbol: htl_1
Assembly: GCA_901482245.1
Location: CABEEJ010002122.1:20247-40494[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 2.9e-09 1.8e-06 29.9 0.0 2 37 171 206 170 211 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	2.9e-09	1.8e-06	29.9	0.0	2	37	171	206	170	211	0.93

Sequence Information

Coding Sequence: ATGGACCAACGTTCTCACACCACCGGCTTCACTAAAAGGACGAACGCTCTAGTCGGCACGCCCTCTCGACACTCGCCGCCTGCGGCAGAGTGGTTTGAGTATTCTCTGGCCTCAACCTCGGTCGTGAAGGTGTCGGACAACCCTGAAGTGAATCTTACGGTGGACGAGAGGTTGAAACTCCGGTGCAACTCTCCTCAGCCTCCGACCTCGGTCCAGTGGTTCAAGAACCATCACAAGTTGCAGAATAAGGGCCATCCCAACATCAAGATAACCAGGCAGATCCTCAAGTTTCGAACTCTGGAAGTGAGTGACTCAGGAGTGTACAGATGTCTTCTGACGATGAACAAGGGTGTCCAAACTTGGCGCAACATCTCTGTGACGGTGCTGCCGCCCGACGATTACAGCATGGACTCCACGTCCTTAGATCTGAACGTCAACCATATCAAGTCCGAGTATGAGACGAAGAAACACGAGAAAATAATGACGAAACGAAAATATGGAGCTTGGAGTGAATCGGATATGGAACGAGCCCTCGCAGCTTATAGAAATGGGGACGTGGGTTTTAATGAATGCTGTCGCCAATACGGAATTGCAAAGCCAACACTCAAGCGCCACTTAGACTGCAAGAATGTTAAAGCTAATAACGGTACAAAGGCTCTAGGCCGTACAACTACCCTGCCACCTGAAATTGAAAAAGAGCTTGtcaatcacatttttaaattagaggaGCTTCTTTTTGGCCTAACAATTGTTGATGTGCGCAAGTTAGCATATCAAATAGCAGAGAAGAATCACATCTCACATAACTTTAACCAAGAGACCAAAATGGCAGGtaaaaaatggttttacgcTTTTAAGGCGCGTCATAAAGACATATCGTTGCGTGAACCAGAAGCGACATCAATGGCACGAGCAAAaggattcaataaaaaaaatgtttccgaattttttgacattttagaaAAGGTTGTTGATGAAAACAAGATTGACGCCACTCGATTGTTTAATGTTGATGAGTCTGGCATCAGCACTGTTCAAAATAAATGCCAGAAAGTGCTAGCTAAAAAAGGGAAACGTCAAGTTGGATCAATTTCAAGTGGGGAAAGAGGGGTAAATACAACAATAGTATGTTGCAATAGTGCATCGGGAACCTATGTCCCTCCCATGTTAATTTTTAAGCGCATGAGAATGGCTAATGAATTAAAAGTTGGGGCTCCACCTGGGGGTTTGGTTGAGGTTTCTGAAACAGGCTACATAAACAGtgacctctttgtccagtggttaaaacattttattgctgCCGTCAAACCAAACAACGATAACAAAGTTATCTTAGTTCTAGACGGCCACACAACACATTCAAAGAACTTGGAAGCTTTGGAAATAGCAAGAGAAGCTGGAGTAATTATGTTGCAGTTGCCTGGCCACACAACTCATCGGGTTCAACCATTAGACAAGTCGTTTTTTAAACCACTGAAAGGGTACTACACACAAGTGGTTGAAAAATGGCTTCGTACCAATCCAGGACTATGTGTTACACAATACCAGGTGACTCAACTTGTGGCAGAAGCCTATGCAAGGGCAGCGACAGTTGAGAATTCCATTAATGGATTCCGTGGATGTGGAATCTGGCCAGTTGACCGTAATGTGTTTAAAGATTCTGATTTTTTACCAGCTGAATATCTTGAGCCTTCAGAAGATAGCAATGTAGATGCACATGCACCACTTACCAAAGATGTCACCAATGGACCACCCACTGCAGATGAAACCAATGACCGACCGGATGTTGCAGTAGAGCCAGAAGCTGGACCAGCCAACACCTCACAACTTAATGTGTCAATTGAAGCTATCTCACCCATTCCAAAACCCACAAAAAAAAGAGTGTCAAAACGAGGTGGATTGTCGGCTATGTCCCTTATGGAGGGAAGAGACGAGGACACAAATACCACGACCAACTCTTCTTACAACTCCACAGGGCAGCGAACTCTTCCTTACTTTATCCGCAGAGACAAGATGTCCCGCATAATCGCGAGGCCTGCGGGCAACATGTTGAGGCTCAAGTGCCTGGCGGAAGGTGAACCTTCTCCCAACATCACGTGGTATAAGAATGGAAAGGAACTCAACCGGGCTGCCGGAATGGTCCATTATAACCGTTGGTCCATCATGCTGGAGGACTTGATGACGCAGGACTCGGGGAACTACACTTGCCTCGTCTGCAATAATGTTGGGTGTATCGACTTCTCCTTCCAGGTGGACATCATTGTGCCGGGCCTACCTTCCAACATGACCGCTCTCGTCGGCTCCGAAGCTACATTTTTCTGCGAGGTCATAGGGAGCTCTTGGATCCTCTGGGTTCACACCCCTCGTGACGTCCCCGACGAGATGGAACTTCTCGACCTGGCAGCTAATGTGTCTGCCTCACAGAAGGTGAGGGGGAAATGTTTCTAA
Protein Sequence: MDQRSHTTGFTKRTNALVGTPSRHSPPAAEWFEYSLASTSVVKVSDNPEVNLTVDERLKLRCNSPQPPTSVQWFKNHHKLQNKGHPNIKITRQILKFRTLEVSDSGVYRCLLTMNKGVQTWRNISVTVLPPDDYSMDSTSLDLNVNHIKSEYETKKHEKIMTKRKYGAWSESDMERALAAYRNGDVGFNECCRQYGIAKPTLKRHLDCKNVKANNGTKALGRTTTLPPEIEKELVNHIFKLEELLFGLTIVDVRKLAYQIAEKNHISHNFNQETKMAGKKWFYAFKARHKDISLREPEATSMARAKGFNKKNVSEFFDILEKVVDENKIDATRLFNVDESGISTVQNKCQKVLAKKGKRQVGSISSGERGVNTTIVCCNSASGTYVPPMLIFKRMRMANELKVGAPPGGLVEVSETGYINSDLFVQWLKHFIAAVKPNNDNKVILVLDGHTTHSKNLEALEIAREAGVIMLQLPGHTTHRVQPLDKSFFKPLKGYYTQVVEKWLRTNPGLCVTQYQVTQLVAEAYARAATVENSINGFRGCGIWPVDRNVFKDSDFLPAEYLEPSEDSNVDAHAPLTKDVTNGPPTADETNDRPDVAVEPEAGPANTSQLNVSIEAISPIPKPTKKRVSKRGGLSAMSLMEGRDEDTNTTTNSSYNSTGQRTLPYFIRRDKMSRIIARPAGNMLRLKCLAEGEPSPNITWYKNGKELNRAAGMVHYNRWSIMLEDLMTQDSGNYTCLVCNNVGCIDFSFQVDIIVPGLPSNMTALVGSEATFFCEVIGSSWILWVHTPRDVPDEMELLDLAANVSASQKVRGKCF*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -