Tdou006578.1
Basic Information
- Insect
- Timema douglasi
- Gene Symbol
- -
- Assembly
- GCA_901482245.1
- Location
- CABEEJ010000352.1:14776-16597[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.8e-10 4.8e-07 31.7 0.0 2 38 18 53 17 57 0.95
Sequence Information
- Coding Sequence
- ATGACAACTAGAGAAGCCAGAAAAGCAAAAGGTGTGTATGGTAAATGGAAAGATGACGATCTAAAATTGGCTTTGGCAGCTGTGAAGGATGGTGTCGGTGTTAATGAGTCGGCCAGGAGGTACAACATACCGAAAACGACGCTAAAAAGATATATCCGTAGTCAAGCAATCACCTCTGAAGTTCGAATTGGTCATCCAATTGACTTGCCTACTGCAGTAGAAGATGATCTTGTTAATCATCTGATACTtttggaaaatatgttttatggCCTGACTAGAAAGGGCATGATGAGACTTGCGTTTGAAATAACAGAGGCAAATAAATTGCAGACGCGTTTCAACAAGGAAAAGCAATCAGCTGGCAAGGAATGGTTTGAAGGCTTTATGAAGAGTCACCCTGAGCTGAGCTTAAGACAGCCAGAGCTAACCTCTCAGGCTAGAGCTTCTGGTTTCAACAAGGTTGTAGTTTATAAGTTCTTTGATGTACTAGAGAATATTGTTGATGAACATAAAATTACTGCTGAAAGAATATTCAACATGGATGAAACTTCTCATACAGTTGTGCAACGTCCAGAAAAAATCGTGGCCCAGAAGGGCAAACACCAGGTAGGAGCTATTACTAGTTGTGAACGAGGACAGAATGTGACAGGGGTTTACGCTGTCAGCGCAGCAGGTTTATACGTCCCACCAATGTTGATCTACCCCAGGAAGAGGATGAAGGAATCTCTTTCATTTGGAGCTCCACCGGGCACAATCTTCTGCTGTCAGGATAAAGGGTGGATGAATACAGAAATATTCTATCATTGGATTGAACACTTTGTGGCAGTCGTGAAACCTTCAGCTGAAGCAAAGGTCTTGTTGATCCTGGATGGGCACAGTACCCACACCCAAAGTCTAGCTGCCATCGAAGTTGCCCGAAAGAATGGAATCATCATGCTGTCACTGCCATCCCATTGTACCCATCGGATGCAGCCTTTAGATGTGTCCTTCTTCAAGCCACTAAATACATACATGGGATCAGCAATTGGGACAAAACTAAGGGAAAATCCTGGGAAACGACTAACAACTGAGCACGTAGCCTCCCTCGTCGGTATTGCATTCCCAAGAGCAGCAACTATGGAAATTGTCATCAATGGATTCCGAGCTAGTGGATTATGGCCGGTGGACCGACATATCTTTACTGATGCTGATTTTGCTCCATCAGCTGTAACTGATCAGCCTGAAGCTTGTCGAGATGAGGACACATCATCTGCTACAACTTTAATATCAACCCCAGGTCCTTCAAATGTGACCCAACATGAGAGTCCAGATTATGTTCCAGCTCAAATAATTATTCCCTTACCTTCATCCAGTGCAGATGGTTCAAGGAGAAAAGTTGGAAAGCGTGGTACAGCATCTGGCGTAATCTTGACTGGAACTCCTCACAAGAAAACGCTTGAAACATCAAATTCTGTTGCacccaaacaaaaaaaaggaaGCTTTTCGGGAAGACAACAGTCATTGCTGATATGTCAGGCGCAACGGATGATAGCAAAACTCACTGTCTTGTGTGTGGTGAATGTTATGAAGAAGACTGGATTCAATGTGAAAAGTGCAAAGGATGGTCACATGAAAACTGCGCCGAATTAA
- Protein Sequence
- MTTREARKAKGVYGKWKDDDLKLALAAVKDGVGVNESARRYNIPKTTLKRYIRSQAITSEVRIGHPIDLPTAVEDDLVNHLILLENMFYGLTRKGMMRLAFEITEANKLQTRFNKEKQSAGKEWFEGFMKSHPELSLRQPELTSQARASGFNKVVVYKFFDVLENIVDEHKITAERIFNMDETSHTVVQRPEKIVAQKGKHQVGAITSCERGQNVTGVYAVSAAGLYVPPMLIYPRKRMKESLSFGAPPGTIFCCQDKGWMNTEIFYHWIEHFVAVVKPSAEAKVLLILDGHSTHTQSLAAIEVARKNGIIMLSLPSHCTHRMQPLDVSFFKPLNTYMGSAIGTKLRENPGKRLTTEHVASLVGIAFPRAATMEIVINGFRASGLWPVDRHIFTDADFAPSAVTDQPEACRDEDTSSATTLISTPGPSNVTQHESPDYVPAQIIIPLPSSSADGSRRKVGKRGTASGVILTGTPHKKTLETSNSVAPKQKKGSFSGRQQSLLICQAQRMIAKLTVLCVVNVMKKTGFNVKSAKDGHMKTAPN*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01446446; iTF_01446447; iTF_01448408;
- 90% Identity
- iTF_01446446; iTF_01446447;
- 80% Identity
- iTF_01446447;