Basic Information

Transcription Factor Domain

TF Family: CUT
Domain: Homeobox|CUT
PFAM: PF02376
TF Group: Helix-turn-helix
Description: The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.051 9.4e+02 2.2 0.0 22 40 9 28 6 34 0.78

2 9 0.0042 77 5.7 0.0 21 42 34 56 24 60 0.86

3 9 5.6e-05 1 11.7 0.1 21 64 60 106 58 107 0.77

4 9 0.0077 1.4e+02 4.8 0.0 22 42 100 121 85 125 0.74

5 9 0.0048 89 5.5 0.0 21 40 112 132 102 138 0.70

6 9 0.038 7.1e+02 2.6 0.0 22 42 139 160 137 164 0.78

7 9 0.0087 1.6e+02 4.7 0.0 22 42 165 186 154 191 0.76

8 9 0.00059 11 8.4 0.0 21 42 177 199 165 206 0.75

9 9 0.0033 62 6.0 0.0 21 39 190 209 188 212 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.051	9.4e+02	2.2	0.0	22	40	9	28	6	34	0.78
2	9	0.0042	77	5.7	0.0	21	42	34	56	24	60	0.86
3	9	5.6e-05	1	11.7	0.1	21	64	60	106	58	107	0.77
4	9	0.0077	1.4e+02	4.8	0.0	22	42	100	121	85	125	0.74
5	9	0.0048	89	5.5	0.0	21	40	112	132	102	138	0.70
6	9	0.038	7.1e+02	2.6	0.0	22	42	139	160	137	164	0.78
7	9	0.0087	1.6e+02	4.7	0.0	22	42	165	186	154	191	0.76
8	9	0.00059	11	8.4	0.0	21	42	177	199	165	206	0.75
9	9	0.0033	62	6.0	0.0	21	39	190	209	188	212	0.81

Coding Sequence: ATGTTCTCAGAGGATGTTCTCAGAGGATGTTTCCAGAGGATGTTCTCAGAGGATGTTCTCAGAGGATGTTCTCAGAAGATGTTCCCAGAGGATATTTCCAGAGGATGTTCTCAGAGGATGTTCCCAGAGGATGTTCTCAGAGGATGTTCTCAGAGGATGTTCTCAGAGGATGTTTCCAGAGGATGTTCTCAGAGGATGTTCTCAAAGGATGTTCTCAGAGGATGTTCTCAGAGGATGTTCTCAGAGGATGTTCTCAGAGAATGTTCTCAGAGGATGTTCTCAGAAGATGTTCCCAGAGGATGTTTCCAGAGGATGTTCTCAGAGGATGTTCTCAGAGGATGTTCTCAGAGGATGTTCTCAGAGGATGTTCTCAGAGGATGTTCCCAGAGGATGTTCCCAGAGGATGTTCTCAGAGGATGTTCTCAGAGGATGTTCTCAGAGGATGTTCCCAGAGGATGTTCCCAGAGGATGTTCTCAGAAGATGTTCCCAGAGGATGTTTCCAGAGGATGTTCTCAGAGGATGTTCTCAGAGGATGTTCCCAGAGGATGTTCTCAGAGGATGTTCTCAGAGGATGTTCTCAGAGGATGTTCTCAGAGGATGTTCTCAGAAGATGTTCCCAGAGGATGTTCCCAGAGGATGTACAAATATCTCATTAG
Protein Sequence: MFSEDVLRGCFQRMFSEDVLRGCSQKMFPEDISRGCSQRMFPEDVLRGCSQRMFSEDVSRGCSQRMFSKDVLRGCSQRMFSEDVLRECSQRMFSEDVPRGCFQRMFSEDVLRGCSQRMFSEDVLRGCSQRMFPEDVLRGCSQRMFSEDVPRGCSQRMFSEDVPRGCFQRMFSEDVLRGCSQRMFSEDVLRGCSQRMFSEDVLRRCSQRMFPEDVQISH*

Sequence clustering based on sequence similarity using MMseqs2