Basic Information

Insect: Timema cristinae
Gene Symbol: -
Assembly: GCA_002928295.1
Location: CM009478.1:7052665-7062089[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.26 37 6.5 0.1 1 23 81 104 81 104 0.97

2 19 9.8 1.4e+03 1.5 4.5 1 23 110 132 110 132 0.98

3 19 0.026 3.8 9.6 0.4 2 23 138 159 137 159 0.97

4 19 6.9 1e+03 2.0 2.8 1 23 165 187 165 188 0.94

5 19 0.83 1.2e+02 4.8 2.3 2 23 473 494 472 494 0.96

6 19 0.15 21 7.2 3.4 2 21 519 538 518 539 0.94

7 19 0.0059 0.86 11.6 0.1 2 23 660 681 660 681 0.96

8 19 0.018 2.6 10.1 1.2 1 23 689 711 689 711 0.98

9 19 0.031 4.6 9.3 1.5 1 23 741 763 741 763 0.96

10 19 0.014 2.1 10.4 4.4 1 23 770 792 770 792 0.99

11 19 0.072 11 8.2 2.8 1 23 892 914 892 914 0.96

12 19 3.8 5.6e+02 2.8 0.7 1 23 1008 1030 1008 1030 0.94

13 19 0.35 51 6.0 5.5 1 23 1036 1058 1036 1058 0.98

14 19 0.073 11 8.2 0.2 1 23 1121 1143 1121 1143 0.96

15 19 0.0073 1.1 11.3 1.1 1 23 1149 1171 1149 1171 0.97

16 19 0.0061 0.89 11.6 2.6 1 23 1254 1276 1254 1276 0.97

17 19 7.6e-05 0.011 17.6 2.1 1 23 1282 1304 1282 1304 0.99

18 19 0.003 0.44 12.5 0.2 1 23 1396 1418 1396 1418 0.98

19 19 0.048 7 8.7 5.7 1 23 1428 1450 1428 1450 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.26	37	6.5	0.1	1	23	81	104	81	104	0.97
2	19	9.8	1.4e+03	1.5	4.5	1	23	110	132	110	132	0.98
3	19	0.026	3.8	9.6	0.4	2	23	138	159	137	159	0.97
4	19	6.9	1e+03	2.0	2.8	1	23	165	187	165	188	0.94
5	19	0.83	1.2e+02	4.8	2.3	2	23	473	494	472	494	0.96
6	19	0.15	21	7.2	3.4	2	21	519	538	518	539	0.94
7	19	0.0059	0.86	11.6	0.1	2	23	660	681	660	681	0.96
8	19	0.018	2.6	10.1	1.2	1	23	689	711	689	711	0.98
9	19	0.031	4.6	9.3	1.5	1	23	741	763	741	763	0.96
10	19	0.014	2.1	10.4	4.4	1	23	770	792	770	792	0.99
11	19	0.072	11	8.2	2.8	1	23	892	914	892	914	0.96
12	19	3.8	5.6e+02	2.8	0.7	1	23	1008	1030	1008	1030	0.94
13	19	0.35	51	6.0	5.5	1	23	1036	1058	1036	1058	0.98
14	19	0.073	11	8.2	0.2	1	23	1121	1143	1121	1143	0.96
15	19	0.0073	1.1	11.3	1.1	1	23	1149	1171	1149	1171	0.97
16	19	0.0061	0.89	11.6	2.6	1	23	1254	1276	1254	1276	0.97
17	19	7.6e-05	0.011	17.6	2.1	1	23	1282	1304	1282	1304	0.99
18	19	0.003	0.44	12.5	0.2	1	23	1396	1418	1396	1418	0.98
19	19	0.048	7	8.7	5.7	1	23	1428	1450	1428	1450	0.98

Sequence Information

Coding Sequence: ATGTTCCTATCTCAGACATCAGGAGGGTGGATGTTCTTATCTCAGACATCAGGATGGTGGACGTTCTTATCTCAGACATCAGGAGGGTGGATGTTCCTATCTCAGACATCAGGAGGGTGGATGTTCCTATCTCAGACATCAGGAGGGTGGATGTTCCAGGTGAAGCTGGAGCCCATGGATACGAAAGAGAGTTGTAGCGAGGAAGACCCAAAGCCTATAAAGGGGGCAATTGTTGGAGAGTACCCCTGCTCTGCCTGCGGGTTCTCTAGTCGCAGCCGCGCTCTCACAGCCCGTCATGAGCGCGTGGCGCACCTCAAGAAGAAGTTCTATCGTTGTGTGAAGTGCAGCTATGTGACACACATGAAGGCACGCTATACCAAGCACGTCAAGTACCACTCCATGCCCATGATCAAGTGCGAGCTGTGCGACTTCCGCACGCCTTACAAATGGAACCTGGACCGTCATGGCCGCAACCACCAAGGGGGCGGAGCCTACCACTGCTCTCTCTGCAACTTCACCGCCGACATCAAGCAGAGTTTGACGGTGCATGAGATGAACCACCACGTGCCTCCAGTTGGTGGTGCATTGGCGCAACAGGGCAGGAGGAGGAACAAAGTCGGCGCCAGCGACTCTATTCCCCAAGCCGAGGAGGGGATCGACCAGGCTGAGCTGGAACTGCTGAGGATGGAGCGGGAGGACACGCAGtTTACCCCTGTAGTGACCCCCAGCGCACCTAATGCCATCACCACAGCAACCCGCAACAACATGCGGTCATCCTCCGCGGCGGGCATCGCTCGTCGTTTGTCACGCTCCTCGCCCAAAGCCACGACGACGCTCCAGGAGATGAACGAACGTCACAACTTCCACACCGACTTTATCCATCCGGATGACATTGTGGAACATCGGAACGGATCTGTTTACATCAAGCACCTGAGGTGCCGAGCCTGTAACTACAAGGCGGCCTTTGAGTGGGAGATAGCTCGGCACGAGGGCCGGGTCCACGGGATGGTCCGTGAGGTGCCACCAGGGGGCCAAAAAACATCCGTTAAAAAGGTCCCTCGGCCTATCCCCAACCTCATCCGCATACAAAGCAAAGCAACCCCAGCCCCATCTTCCACATCGTCTCCCTTGCCCATACTGCGCATACCCACCGTGAGGGGCAGAGTCCCGGTTGCATCGCTGCTCAAGCCGCGAGAGCCCCAGATGAGCGATAAGGACCTGAATGAGATCTGTGCTAAGTCCTGCCCAAACAGTTTTTTGAAAGACTTTGCTTCATTGATTGGCGATGAAGACGCCTTTAAAACTTCGGACCCAGACAAGTCTGTGGGTAAGAGCAGTCCCCCGGCGGCGTTCAAGCGCAAGAATGCATCGTTCTTTGACCAGTTGAAGGAGAAGCTGGGTGCTGCGGATAACTTGGTGTGTACATGGTGTGGCCATGAGAGCAAGTGTTTGTCCGAGTTGGTGAGACACCAGAAACTACACACAGGCAAGGCCATGAGGGGAGATAGCTCGACCAGCAGTCTTACCATCGGTGCAGCTGAACTGTCTTCTACAAGATGTCAGCACTGTCGACACCGGTGCAAGACCAGCGCTGACCTGATAGTACACCTGCAGTTGTGCGAAGAAGCAAAGAGGAACCACGAACCGAGTGCTACCGAGGACCAGAAGGACCAGGATGAGGAGAAGATGGAAAACGACGAGCTCCCTGTTGAGAATAAGGTGTTTGTGTGGAATGAACTGCCCCAGCCCGAGGAGTCCAGACCGCTCCCCGAGGATGAGAGCGAGTCTCCTCCAGACAGCATAGCGGCAGTGGAGACTACTCTGGACTTCCAGCCAGCCGTTGCCGCAGTCAAGAAGGTGAGAGACAATCAGCGGCATTGTCGTCTCAAACACAGCGGGGACATAAAGGTGCTCGTAGGACAACCGGAGGAAGAATACACAACTACATCTCCTCAGCCAGAAACTAGAGAGCCCGAAACTTGCAGCAAGTGTCCGTATGTTGCGTCCAGTGCTAGTGACCTGAAAGATCACTTGGAGCAGCACCAGTCCCGTCCAGGAGCCATATTCAAGTGCTACTACTGTCCTTTCTATGTCAGCGAGAAGAGGGAGCTGTTGCAACACATGAATCTCCATGGGGTCAAGGAGTCAGAGGAACTGTCAGTGCAGGAGAAAGAGTCAGTGCGGCAGTACCACAACGTGGATGTTAGCCCGGGTAAACGCTACAAATGTGCGGGCTGTCCATATGTGAGCAACAGCAAGTCCCAGTTCCTCTATCACAAGCAGTTTCACCGTCCCCGTGGGGCCCCCTTCAAGTGTGGCCTGTGCTCCTACAACGTGAGTCGACGACACCTTCTGCACCAGCATCTGCGCGTGCATGGTATACTGGTCCCCCCGCAGAAAACTAGCCTTGTCAAGACCGACCAAACTCACCATGAGCACGTAGAGGAGGTACAACCGCTCTGCCGTGCCCCGCACGCTGCAGTAGATACGCGCGGCATGGCCGACGTGCCACTAGTCTGGGTCTCCCGCGGCGACAAGTTCTTCAAGATGTTCAAATGCCGGTACTGCCCGCATGTGAACCTGCGCAAGGTGAACATCCAGGAACATGAGAAGATGCACCGGGCCCGAGGGGGTCTCGAGCAAGACGAGTCCATGGCTTCACCCCAGCAACAGCATCATTGCCCCGACTGCAACTACATGTGCAACAATGCCGGCGTGCTGTCCTCCCATGCCAAGGTTCACCAGGGTGTGTACGGTCATGTACACTGTCTCGTCGACTCATCCAAACCCGACTCTGACCAGGTAACGAAATTGCGGCAATACCTCTACGAAGACGGAGATGTCTTAAGCGCGCACGACGAACAGATACAAAGTTACGATGAGGACGAGGACGATGAACAGAATATGTCCCGGTCTATCCTGAACACAAATCAAAGTGACGAACAAAAGGATTTCCTTGCCGAGATGCAGCTGATTGCCAACGACTCAGGACAGCTGCAAGAGGAACAGCAGAGACGGCTGTTCTTTTGCTCGCTATGCCCAGCGAGGTTTCTTTTTGAGAAGGAGTTGGCTATCCACAAGCGTTTCCATGAGATTCGTTTAGCGCATCGGTGCGAGTCTTGCTCATACGCTGCCCGCCAGCGGCATCACCTTCTATCACACCTTAAGGTACACTCGGAGGAGTACCAGCAGCGCACAGTTACACTCTCCGCCATGTACCCCACCTCACCAGACCACCCTCAACCTAACACAGCCGTTGTAATGGAAGGTACTGGGGTAGCCGGCCCCCTCTGGATCGTTATCGCTGGCCGGACGACCACTACTCTCTCGGAGTCCACAAAGCCCGCCCCTGTGAAACAATACCCGTGTTACATGTGTCCTGCCAAGTTCTTCAAGAGTGTGGCACTGGAATACCATCTATCTCTGCACGGGGGAGACGGGCCACACAAATGTAGGCGCTGTAACTATGCTGTCAAAACTTTGGGGAATCTGGCCAAGCATGAGATGGTCCACAATGCGACCGAGGGCCCCCAGGAGGCGTCTCATCTCTCTCCTGCCGTTATTGTCCAGCAGAGTGTTCCACTGTCTGGGACAGATCTGTTTGAGCGTAAGGAGGCCCAGAAGCAAAGCTTGGCCAGCGGGGTCCCAGTTTATCAACCGCCTCTTCACGTGGACCCTCAGTTCGGCATCTTGATGCACGGGAACCCCGAGTACATCTACCCCACATACCTGAAAAATGGTCGCCTAAAGGAGAAACGATACAAGTGTCATAAGTGTCCAAGTGCTTTTGAGAAGCGTGAACAATATAAGGTGCACTTGTCTCTTCATGGCTCCAAGCAGCGCTACAAGTGTGAAAAGTGCGACTACTCTGTTAAGTACTACGCCAACTACATCCAGCACATGAGGAAACATCAGAATAACGAGGAGGCCCAGGCGGCCAAGAAGGTTAAGGAGGGTATGCCGCTTCAGCCAGGAGTCTTGGCCCCTCTAGAGGATGTCGGGATGGGGACAGAGGAGCCCTTGGTTACGTCTCCACCCTTTCAGCCACGCCCTGTTAAGTCGATTGGGTGGTCAGCCTCGTCTAATGGGGAACCCCAGGCGCAGAGCGCAACAGAACGTCAGGTGGCATTACTCCAGCAGTTTCGGCGCCAAGCTGGTCCCCCGGAGGATGAGAACCGCAGGGCGTTCCCCTGCCTATACTGCCCCTACTCAAGTCCCAGAAAGGATGGGCTGGACAGCCATGTCCGAAGGCACTTGGCGGTGTCTGGGACTCTCTCAGCTCACACATGCTCTCACTGCGACTACACGGCTACACAACTGCACTTCTTGCGAGACCATGTGAGGGTACACTTTGACCTGTCCCGGCGACCCCGACCTGAGGCATACATGAAGTGTGAGCGGCTGGAACTAACAGCATACTCTGAGGGAGATGGGACCGAACCTCCAGACAAGGTGTTGCTATTCCGTGATTGTGGAGAGCCCCTGCCTCATGACGAGAGGTTTGAACCAATCTACTCACCGGGACTGATAGAGAGTGGCGATGATACCACAAAGGTCTTCATTGACATCTCAACTGGTCTCTCCAAGGTGACGCCGGAAGCTATGGAGCCGGATTCCATGGTCAAGGTCGTCCAGGATGTGAAACTGGAAGATGACGAAGAGGAAGTATTGGTCCGAGCAGACAAGAGCTCTGATGCAGTTATTGTCGTTTCTGACGATGCAGTCAAGTCCGAGAAGGAATCGGATTCGAGCAATTCAACTTCAAGCTCTTACTCGTCTGGCTCATCTTCTTCCAGTTCGTCGTCTTCTAACAACACCAAGTCGAGCTCCACGAGTGATTCCGACTCTCAAACTGGCGATGACAAGCGATCTAGGAGTAAGGAGTGCGAGTTGTTGGACAATGTCAGGGAGGAGAAGACGCGCACCTTGTCAGAGGATGAGGACAGCTGTGAGGAGGAAAGTAAAGTGTTGGGCAATGTCTGTGAGGTGAAGACGCGCACCTTGTCAGAGGATGAGGACAGCTGCGAggaggaaaataaattgttggacAATGTCAGCGAGTCAGGCGATAGTGAACTCAAGATCAAATTGAGCTGTAAATTGTCTGAGGATAGCAGCGAAGTTTCTGACTGGGAATAG
Protein Sequence: MFLSQTSGGWMFLSQTSGWWTFLSQTSGGWMFLSQTSGGWMFLSQTSGGWMFQVKLEPMDTKESCSEEDPKPIKGAIVGEYPCSACGFSSRSRALTARHERVAHLKKKFYRCVKCSYVTHMKARYTKHVKYHSMPMIKCELCDFRTPYKWNLDRHGRNHQGGGAYHCSLCNFTADIKQSLTVHEMNHHVPPVGGALAQQGRRRNKVGASDSIPQAEEGIDQAELELLRMEREDTQFTPVVTPSAPNAITTATRNNMRSSSAAGIARRLSRSSPKATTTLQEMNERHNFHTDFIHPDDIVEHRNGSVYIKHLRCRACNYKAAFEWEIARHEGRVHGMVREVPPGGQKTSVKKVPRPIPNLIRIQSKATPAPSSTSSPLPILRIPTVRGRVPVASLLKPREPQMSDKDLNEICAKSCPNSFLKDFASLIGDEDAFKTSDPDKSVGKSSPPAAFKRKNASFFDQLKEKLGAADNLVCTWCGHESKCLSELVRHQKLHTGKAMRGDSSTSSLTIGAAELSSTRCQHCRHRCKTSADLIVHLQLCEEAKRNHEPSATEDQKDQDEEKMENDELPVENKVFVWNELPQPEESRPLPEDESESPPDSIAAVETTLDFQPAVAAVKKVRDNQRHCRLKHSGDIKVLVGQPEEEYTTTSPQPETREPETCSKCPYVASSASDLKDHLEQHQSRPGAIFKCYYCPFYVSEKRELLQHMNLHGVKESEELSVQEKESVRQYHNVDVSPGKRYKCAGCPYVSNSKSQFLYHKQFHRPRGAPFKCGLCSYNVSRRHLLHQHLRVHGILVPPQKTSLVKTDQTHHEHVEEVQPLCRAPHAAVDTRGMADVPLVWVSRGDKFFKMFKCRYCPHVNLRKVNIQEHEKMHRARGGLEQDESMASPQQQHHCPDCNYMCNNAGVLSSHAKVHQGVYGHVHCLVDSSKPDSDQVTKLRQYLYEDGDVLSAHDEQIQSYDEDEDDEQNMSRSILNTNQSDEQKDFLAEMQLIANDSGQLQEEQQRRLFFCSLCPARFLFEKELAIHKRFHEIRLAHRCESCSYAARQRHHLLSHLKVHSEEYQQRTVTLSAMYPTSPDHPQPNTAVVMEGTGVAGPLWIVIAGRTTTTLSESTKPAPVKQYPCYMCPAKFFKSVALEYHLSLHGGDGPHKCRRCNYAVKTLGNLAKHEMVHNATEGPQEASHLSPAVIVQQSVPLSGTDLFERKEAQKQSLASGVPVYQPPLHVDPQFGILMHGNPEYIYPTYLKNGRLKEKRYKCHKCPSAFEKREQYKVHLSLHGSKQRYKCEKCDYSVKYYANYIQHMRKHQNNEEAQAAKKVKEGMPLQPGVLAPLEDVGMGTEEPLVTSPPFQPRPVKSIGWSASSNGEPQAQSATERQVALLQQFRRQAGPPEDENRRAFPCLYCPYSSPRKDGLDSHVRRHLAVSGTLSAHTCSHCDYTATQLHFLRDHVRVHFDLSRRPRPEAYMKCERLELTAYSEGDGTEPPDKVLLFRDCGEPLPHDERFEPIYSPGLIESGDDTTKVFIDISTGLSKVTPEAMEPDSMVKVVQDVKLEDDEEEVLVRADKSSDAVIVVSDDAVKSEKESDSSNSTSSSYSSGSSSSSSSSSNNTKSSSTSDSDSQTGDDKRSRSKECELLDNVREEKTRTLSEDEDSCEEESKVLGNVCEVKTRTLSEDEDSCEEENKLLDNVSESGDSELKIKLSCKLSEDSSEVSDWE*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -