Tcri024006.1
Basic Information
- Insect
- Timema cristinae
- Gene Symbol
- Prdm15
- Assembly
- GCA_002928295.1
- Location
- CM009479.1:97034834-97082773[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 5.4 7.9e+02 2.3 0.5 3 23 309 329 307 329 0.85 2 16 0.0018 0.27 13.2 0.6 1 23 646 668 646 668 0.98 3 16 0.31 45 6.2 1.1 1 19 672 690 672 692 0.92 4 16 0.16 24 7.1 2.5 2 23 701 722 700 722 0.95 5 16 0.21 31 6.7 0.7 2 21 727 746 726 751 0.91 6 16 0.0024 0.34 12.9 0.3 3 23 758 778 757 778 0.98 7 16 0.0063 0.92 11.5 2.3 3 23 818 838 817 838 0.97 8 16 0.086 13 8.0 1.9 2 20 843 861 842 862 0.91 9 16 0.063 9.2 8.4 0.7 2 23 868 888 867 888 0.96 10 16 0.78 1.1e+02 4.9 0.7 1 17 893 909 893 910 0.89 11 16 0.0034 0.5 12.4 5.1 2 23 939 960 938 960 0.95 12 16 0.00019 0.028 16.3 1.9 1 23 965 987 965 987 0.97 13 16 7.6e-05 0.011 17.6 0.5 1 23 992 1014 992 1014 0.96 14 16 2.4e-05 0.0035 19.1 0.3 1 23 1020 1042 1020 1042 0.97 15 16 0.00038 0.055 15.4 0.8 2 23 1051 1072 1050 1072 0.95 16 16 0.16 24 7.1 1.5 1 11 1078 1088 1078 1090 0.92
Sequence Information
- Coding Sequence
- ATGTTGGCACGCTTTTTAATCTTCATCTTCTTCTTCTACAGTTCCAAACCTGCCACACTCACTCCTACTCGAGAGATGGAATTGAAAAGATTACAGTTGCGATGGCGATGTGAACCGCCTGTGAGTGAACCCGCTCCCGCGAGTCAATCGCAAATAAGCAGGAAAGTACAGATAGAACTGCTTGTTGCAGGCGACGCGAACAGAACTACTACCGGTACCATAGATCAAGTTAACACGATTGCAAAGGATTGGGCGAGGGGAGGGAAGAAACAACATACAAAAAATTGTTATGTGTGCGGTCAGAAACACAACACAAAAAGCTGTGGTATGCTCAGCCACTTACAGCCGATCCGATGGGTGAGGGATACAAAGACCTTGTCTCGGGCGCGGTTGACCCTTCCCACCAATTTGGAGGTGCAAGAAAATGATGGATCGATAAACGTGATGAGTCGCGTCAAGGTCAACAAGGGGACCCAGTTTGGGCCCTTCCAGGCACCGAGGTCACTTCACTTGCCTGCAAACTCCAAATTTCCTTTGCAGGTGTTTGAAAAGTCGAGTAAAGATGTTGCCAGCAGCTACTACCTGGATACCAGTGATGAGGAACAATGCAACTGGATGTGTCTAGTGGCCATCGCTAACTCTCCCAAGAGCCAAAACCTTATCTGCTACCAGGACAAGGAGGAGATTATGTTCATTGCTATGAAGGACATTCAGCCCAATGAACACCTGCTGGTGTACTATGCTCCTTACTATGCCATGAAGTTGGGGAAGACACCCTTCCAAATGGAAGTTCCTACCAAGGTTAGTTGGTTCGCTCTGCCGTATCCTAGAGACACTGACATAGGTCGCGAGGCGATGATGAAGGTAGTAGCTGAGCTGCCAGCTGAGAAGCTTGGCGCACGCAAAGTTCTGGACCAATGGTGCTGTAAGCTGTGTGGCTATCAAGAGGCGAGTGTGGCAGTGTACGCCAAACACATGAGGAGTCATTTTAAGCCGCTCCTTAGATCCACAGACAAGCTGTACTGCCATGCGTGTAGGCTGCAGTTCAGCAATGAGAAGGTAATGTTGAAGCACAAGGTGGATTGCCATGGACTTACCTTGAAACGACCGCACCTAATGGAAGTGCTACAAGGTACCCAAGACCCTGAGGGGCCACGCCCTACCTCCTATACAAACCAAGACACCTGTCAGGCCCTGTTCCCTGTCCCTGAACAGGAACAGATGTTTCAGAATCAGTCCTTGAGCAGTCTGCTACAAGAAGGCCACAACGAAGCCCTCAAGTCACTCCTAGACCAATACCAAGTCCCTACTCAGAGAGAAATGCAATTCTCTGAGAAGACACTGCCAGGTGACCCCAAGGAACCTTTTTGCTCACCAGGTTTCATACCTGACCTTGTAGATGCCGCTAACATGGATGCTGTTATGGAGAAGAGCTTCAACCCCTCAGAGTCGAGCAACATTCTCACTAATTTTGATCCTCGGAACGAGCCATCTCTAGGGGGATTGATTGGAACAGGCTCCAAGAGTGAGTGCACGAATAGTACATCTGACGTACATGTGATGATAATGTTGGATCAAGCCAAGTGTGATGAGGTGTACGGTCTTAGTGGTGGCAGGGACCGTGGAGATTGTGGGTTGTCGTACAAGATGGAGGGCTCGGGAGACAGTCGAGACGAACTCAGGACTCCGGTGGGCTTTGGTCTGATTGACGGTTCTGACAGTGCAAGCTGTGATAAGACCAGTAACAAGCTGGATCTGAACGGGGGCCAGGACGCTCTCCTGTCCCTGGTGCCACACAAGGGCTTTAGCATTGGGAGTGATGCAGTAGACAAGACACAGGCTTTAAGTGTGGCTTTGATGGATGCTGTGGACGGAATCAATCAACAGGCAGGCAATGGTACTCCGGGGGAACAGTTATCTGACAAGGGACCTCCCTTCATCTGTGACATCTGTGACAAGGAGTTTCTAAGGGTGATCTATCTGTACAGACACCTGCGAAAACACACGGGAGAGTTCACCTGCATCACCTGTAAGATGGTGTTTGCACGCAAGGAGTCGCTGCTGACCCATTCTTGTTTCTCTAAGGACCTTCCCCCCTTGACCTGTCCCCATTGTTTCAAGACCTTTCTGATCATGAAGCTGCTCAAGAAACACCTCGCCAAACACACCGGCAAATGGACATGTAAAGCATGCAAACGCATCTATAGCTCCAAGCCGGCATTGGCCCAACACAAGTGTTCGCAAGCGCCACACGCCAACAAACTCGCTCTGTGCCCGGTGTGCAACAAAGCATTCCAGAAAATCCTGTGGCTACAGAAACACCTACGCCTTCATGCCGAAACTGTTCCCTGTGACACCTGTGGGAAAAAGGTCTGCCTGGGACCAGAGACAGACACTCATAGCGCTTACTGTGTGCAGGGCAAGCTGCTGGAAGCCATTGGTCAGGCTTGCTGCCCTATATGCAAGATCACCTTCTCAGAGCTGGAGGCATATAGGCGACATGTCCACATGCACACCCACCCATTGAAATGTGAGGAATGCGGCCAGCGCTTCAAATTCAACAAGGGTCGCAGGCTTCATATTTGCCCCGGAGAACCTTGGACATGCGACATGTGTTCTGAGTCCTGCACGCTTGCCAACCTCACCCTCCACCAGGCAAGCCACGGCATTCCACCTCATCACTGCTACGAGTGTGGCCGAGACTACTACCAACAGGAAAACTACCTGAAGTGCTGTGTGGGCCCCCCGAGGAAGGTCAGGATCAAGGAGACCAACAACAACAAGGATACAGCTTCCACGAAATCTGAGAGCTGTGTTTGTCACGTGTGTGGAGAGCTGTTCAAGACCACATCGAGTCTCAGGCTACACATATCCCATCATAAGGAGCAGCAGTACTCATGCGAGATATGTCCTAAACGCTTTTATCGTAAGGATGTCCTGCAGGAACACCACTTTGTACATCAGGAGCCCAAGTTCCCCTGCACAATATGCAACAAGATGCTCAAGTCAAGCAAGTCGCTCAACACTCACATGGTGTGGCACTTGGGCAAGAAGCGTTACTCATGCTCTGAATGTGGACGGGAGTTCTTCCAGAAGGGCAATTTGTTGAACCATGCTGAAATGCACAAGGACGGCCACAGAGCTTTGCTCGAGTGTACTTTCTGCAGCAAGAGTTTCATCAACAAGAATGGGTTTGCACGCCACCAACTGGAGCACACTCAAGCGCACATCTACAAGTGCACACACTGCAGCAAGTCCTTTATCAAGGTCAATATCAAGTTCATAGAATAA
- Protein Sequence
- MLARFLIFIFFFYSSKPATLTPTREMELKRLQLRWRCEPPVSEPAPASQSQISRKVQIELLVAGDANRTTTGTIDQVNTIAKDWARGGKKQHTKNCYVCGQKHNTKSCGMLSHLQPIRWVRDTKTLSRARLTLPTNLEVQENDGSINVMSRVKVNKGTQFGPFQAPRSLHLPANSKFPLQVFEKSSKDVASSYYLDTSDEEQCNWMCLVAIANSPKSQNLICYQDKEEIMFIAMKDIQPNEHLLVYYAPYYAMKLGKTPFQMEVPTKVSWFALPYPRDTDIGREAMMKVVAELPAEKLGARKVLDQWCCKLCGYQEASVAVYAKHMRSHFKPLLRSTDKLYCHACRLQFSNEKVMLKHKVDCHGLTLKRPHLMEVLQGTQDPEGPRPTSYTNQDTCQALFPVPEQEQMFQNQSLSSLLQEGHNEALKSLLDQYQVPTQREMQFSEKTLPGDPKEPFCSPGFIPDLVDAANMDAVMEKSFNPSESSNILTNFDPRNEPSLGGLIGTGSKSECTNSTSDVHVMIMLDQAKCDEVYGLSGGRDRGDCGLSYKMEGSGDSRDELRTPVGFGLIDGSDSASCDKTSNKLDLNGGQDALLSLVPHKGFSIGSDAVDKTQALSVALMDAVDGINQQAGNGTPGEQLSDKGPPFICDICDKEFLRVIYLYRHLRKHTGEFTCITCKMVFARKESLLTHSCFSKDLPPLTCPHCFKTFLIMKLLKKHLAKHTGKWTCKACKRIYSSKPALAQHKCSQAPHANKLALCPVCNKAFQKILWLQKHLRLHAETVPCDTCGKKVCLGPETDTHSAYCVQGKLLEAIGQACCPICKITFSELEAYRRHVHMHTHPLKCEECGQRFKFNKGRRLHICPGEPWTCDMCSESCTLANLTLHQASHGIPPHHCYECGRDYYQQENYLKCCVGPPRKVRIKETNNNKDTASTKSESCVCHVCGELFKTTSSLRLHISHHKEQQYSCEICPKRFYRKDVLQEHHFVHQEPKFPCTICNKMLKSSKSLNTHMVWHLGKKRYSCSECGREFFQKGNLLNHAEMHKDGHRALLECTFCSKSFINKNGFARHQLEHTQAHIYKCTHCSKSFIKVNIKFIE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -