Tcri004482.1
Basic Information
- Insect
- Timema cristinae
- Gene Symbol
- ZNF341
- Assembly
- GCA_002928295.1
- Location
- CM009473.1:36124161-36175777[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.7e-05 0.0025 19.6 5.3 2 23 811 832 810 832 0.96 2 11 2.4e-07 3.5e-05 25.4 1.0 1 23 838 860 838 860 0.99 3 11 0.05 7.4 8.7 0.7 5 23 989 1007 983 1007 0.89 4 11 9.9e-05 0.014 17.2 0.9 1 23 1013 1035 1013 1035 0.98 5 11 0.068 9.9 8.3 0.8 1 23 1051 1075 1051 1075 0.91 6 11 0.0031 0.46 12.5 3.4 1 23 1077 1099 1077 1099 0.98 7 11 9.1e-07 0.00013 23.6 0.7 1 23 1105 1127 1105 1127 0.98 8 11 0.00056 0.082 14.8 0.7 1 23 1133 1155 1133 1155 0.97 9 11 0.85 1.3e+02 4.8 1.2 2 23 1162 1188 1161 1188 0.89 10 11 0.0049 0.71 11.9 5.4 2 23 1205 1227 1204 1227 0.97 11 11 1.9 2.8e+02 3.7 0.9 2 19 1233 1250 1232 1250 0.88
Sequence Information
- Coding Sequence
- ATGGGGCTGCGAGAAACAGCTGTGACGTCAAATAACGGCGCGCATGCGCAGTCCACAGACAAGAGTGGCCGTAGTGACCCATCTCTCTGTGACACTGCCGCTGATATGGAGGAAGAGGACGACCTAATCTTGATCACGTATCTGTTTCTGCTGGGGTTCGTGTTTTGCAGTTGCGTCATCTCATACCTCAGCAACTTTAACATACTGGTGAGATTCTGCCGGTTCCCCCACCTGCGCACGGCCTACAACACGCTAGTCCTCAACATCGCCATCAGTGACATGGTCAAGACAACCACCCTTATAATCATCATCTTCCTGTTCTTCGTGGTGAAACTGTCTCCCAAATCGGCCATCCCTTGTGAGGTATACAACGCCTTGCTGGCAGGCACGACAGGAGTGTCGGTCTACACCATGGTGATACTAGCCGTGTATCACTACTGGGCGACCAGAAGGCTCCTAAACGGACACCAACACAAGACACGCTTCCGTTCCAATCTTTGGACGATCGCCGCCATTCTTCTGTCCTGGGCCTTACCTACCATCTTAGCGTACCCACCCACCATCATCGGGGAGAACTGCGAGTGGGACATCAGGAAGAAACCTCTAAGAACACTATTGGTCTTCTTGGAGTACGTCACTATTCCTCTACTTATCGTCGTAACCTTTTACTTTCTAAAGAAATCAGTTCTTCGAAAACATAAGCTCCTTTACAACGAGGATCTTATTAAACAGAAGAGCCTGTCGAATGGTACAGCGCTTTTATTAGTCGCCATTTTCGTGTGCCAAGTTCCTCTGGTTGTGTGCAGCTTAGCCTTCGTGTATACAGACCTGATGACCGCCCTCACTGACAACAAGTTCCTTTCGTTAGTCGTGTACATCGTGCTGTGCTGTATTGAGGTGTGGATTAAACCCTTCATGCTGTACGTCATCAACCTCGACTACGTGTTTTGCTGCTGTGTGGAGAGGTGTGAAACGATCGGGGAAGAAGAATCTCCGAAGGAGTCACTAGATGATGGTAGATCCCTACAGGCTATACTGGTGGGCAGAGGGGAAGTTGGTACATTCCTACAAGTTATACTGGTGGGAAGAGGGGAAGTTGGTACATCCCTACAGGTTATACTGGTGAGGAGAGTAGAAGTTGGTACATCCCTACAAGTTATACTGGTGGGCAGAGGGAAAGTTGgTGTGTCACTTGACAGTCACACGGTTCAATCTTTGCTAGACTCTCATGGGCTACAAAATGAGGGGCCAGAGACAGTTCTTGGACCCAGTACACTAAAACCAAGTCTTACAGACACTTCTATTGGAATAGTTAATGGGTCAAGCCTTCGCTCTTGTTCTATTGGGAAGTCATCAAACCTCATAGAACAGCTTGGTAATTctacaaaagaaaatgttaggaGTCATAGTGAGGAGGTGGAAAGTTTGAACATTCATTCAGGAAGACAAAGCCCAGGAGAATACCCACAGCTGCAGATACATGCACTGGATACCGACTCATCAGAGCTTGGACAACCGGTCATTCTCAGTGATTCGGACATTCTTTCTTTCAGTATTGAACAGGCTGCGTTGAACATCGACAATACATCACAGCTGACACCCACCTTCCTGACATCTCCGCTGTCGAGTTTCCAGTCCATATCCGACGACAAGTTGGACCCAGAATTAGACAAGAAAGATTTGTCCTCACCTCGCAGCATAAACCTATTAACACCGACATTTCCCAGCTCATTTTTGAAGAACTGCAGGTTTATATTGCCCAATTTGGGTAGTGGCAGTTCCACGCCTGATTCCAATAGGACCTTATTGTTGGATAATTCAGACAAAGTTGTTACGGGCAAAGTGTTGTACACAGAGAGTTGCTCTACAAATGGACAAACAGTTTTGCTTGACTATGTTGATAAAATTACTCAGAGGACATCTTTGTCTGGTTCCGAGTTCACTCCTGGTGCAAGTATAGAATGCACAGACAGTGGTGTGGAGCTCTCAAGCGGGGCCGAAGGCCAAGACCATCTATCAGAGTATTCAGAGGTGCGCGAAGGTGACTCTCTTACCAACATATTTATGGACGTGGGCAAAAATCACCCCATCACTCTTGCCGTTAGCGAGTTTCAACCGGTCATGTGTATAACCAACTCTAAAGTCTCGACATTATCTTCAACGGATGGCAACTCGTCTATGGCCAGCCAACCAAAGCTCATGGGGGAGGACTCTCACCCCACCATGCTCTCTCTGTCTGAATCACCCTCTCATCCTGATATTATCAATTTGGCCGACACGAATGTCATACCGGAGTCTTTATCATATGGTCAACCGCTCGTCATATCCACAGCAGACACTCAACTTGGGACTACATCACAACCAGAGATTGATGACCCATCTagaataaagagagaaaaggaaAATCAATCATCTCGAAAACAAAAGTTACATTGTGAGCATTGTGGTAAAAAGTTTGCCAAGAATTTTGACCTGAAGCAACACATGCGCAGTCATACAGGGGAAAAGCCTTTCCAATGTGTTGTGTGCGGCAGGGCCTTCTCGCAGAAATCCAACGTCAAGAAACACATGACCACACATAAGGTTTGGCCAGATGGCTTATCACGGACATTACCTAAAGAGCCATTTCAAAAAGTGGCAGTGAATgctgatgatgatagtgatacAATCAATCAAAGTGAGGAAACGGATAGCGCACCAGCACATAAAGCGCTGTCTATCCAGAGGTTTTTGGTGAAGCGCAAGATTCCGGTGTTGAAACATCCACCTTACTCACTTGATCTAGCCCCGTGTGACTTTTTTCTGTTCCCAAAGGTCAAGACTGCACTAAAAGGAACCTGTTTCGAGTCTGTTGATGCTGTGAAGGAAAAAGCTACAAAGCTCATGAACAGCCTCTCAGAAAAGGACCGGAAACATTGCTTCCAACAGTGGATGATTTGTATGGTTTACAGGTGTATCCAGAGGAATTGCAACAAGATGTTTACTGACCTGGACTCGTTTGTAGAACACACACAGCTCCACTCTGCGGAAGTGGAGTATCGCTGCCACGTGTGTAGTAAGGTGTTTACCAATTTAGCAGAACTGGGTCTGCATCAATACGTGCACACCCCGGCTAGCGGAACTAAATCTCGCAAGATGAATTGCAGATATTTTCGCTGTGTGAAGTGCAAGAGTCAGTTTGTAAACCCAGAAGCTCTGGACCACCATCTCGCAACATCTACGCACAACTACTCCTGCACGTCATGTGGCAAAGTGTTTACTTGTGAGCGCTACCTTCGAAGGCACCTGGTGACACACAGAACAGCTGAGCCATTCAAATGCCCGGACTGTGGGAAAGGTTTCAAGACTGAGACTTACCTCAATACTCACAGACTCATTCATGGCAGTGAGAAACCTTACAAATGTCAGTACTGTAATGCTGCATTCATTCGTAAGGATAAGATGGTGCGACATTCTTTAATCCATCAGACCGTGAAGAAGCTCAAGTGTCCTTTCCGCACACATTTGGGCTGTATGCGTGAGTTCAACAGAGGAGATAAATTGAAGCTACATATTCTGACACACAGCTCAGTGAAACCAAACCAGTGTCGCAAGTGTCAAGTAAAACCAAACCAGTGTCGCAAGTGTCATCGTTCCTTCTCCAAGATGACCCTCCTTCGTCAGCATGAGCGCACACAACACATTTCATATGTGCACACATGCATTAGCTGTGGCACGagtttTCCAAAGAAGAATCAAATGCGTACCCATGACTGCTCTCAAGCTCGAACGTACCGTACAAAGAGCGAAAAGCAGCCATCGGATACTAAATGCAGAAGGAAAACTCGTAGCAGACATCCAATCAGAATCAAACAAATTGAAGAAATTAATAAGCTCAATGATATCGACAACATCCCTACCATTGAAATTATTGTTGTACCAGCACCAGAAGGTAGCAGTGTACCCCAAAGTTTAGACGGGGAAGAATTGTACGAGGTCATGTTCCAAAGGCAGAGGTGGTGTTACTACCTGTTACTGCACATGCAAACAGAGGGACCTCACTag
- Protein Sequence
- MGLRETAVTSNNGAHAQSTDKSGRSDPSLCDTAADMEEEDDLILITYLFLLGFVFCSCVISYLSNFNILVRFCRFPHLRTAYNTLVLNIAISDMVKTTTLIIIIFLFFVVKLSPKSAIPCEVYNALLAGTTGVSVYTMVILAVYHYWATRRLLNGHQHKTRFRSNLWTIAAILLSWALPTILAYPPTIIGENCEWDIRKKPLRTLLVFLEYVTIPLLIVVTFYFLKKSVLRKHKLLYNEDLIKQKSLSNGTALLLVAIFVCQVPLVVCSLAFVYTDLMTALTDNKFLSLVVYIVLCCIEVWIKPFMLYVINLDYVFCCCVERCETIGEEESPKESLDDGRSLQAILVGRGEVGTFLQVILVGRGEVGTSLQVILVRRVEVGTSLQVILVGRGKVGVSLDSHTVQSLLDSHGLQNEGPETVLGPSTLKPSLTDTSIGIVNGSSLRSCSIGKSSNLIEQLGNSTKENVRSHSEEVESLNIHSGRQSPGEYPQLQIHALDTDSSELGQPVILSDSDILSFSIEQAALNIDNTSQLTPTFLTSPLSSFQSISDDKLDPELDKKDLSSPRSINLLTPTFPSSFLKNCRFILPNLGSGSSTPDSNRTLLLDNSDKVVTGKVLYTESCSTNGQTVLLDYVDKITQRTSLSGSEFTPGASIECTDSGVELSSGAEGQDHLSEYSEVREGDSLTNIFMDVGKNHPITLAVSEFQPVMCITNSKVSTLSSTDGNSSMASQPKLMGEDSHPTMLSLSESPSHPDIINLADTNVIPESLSYGQPLVISTADTQLGTTSQPEIDDPSRIKREKENQSSRKQKLHCEHCGKKFAKNFDLKQHMRSHTGEKPFQCVVCGRAFSQKSNVKKHMTTHKVWPDGLSRTLPKEPFQKVAVNADDDSDTINQSEETDSAPAHKALSIQRFLVKRKIPVLKHPPYSLDLAPCDFFLFPKVKTALKGTCFESVDAVKEKATKLMNSLSEKDRKHCFQQWMICMVYRCIQRNCNKMFTDLDSFVEHTQLHSAEVEYRCHVCSKVFTNLAELGLHQYVHTPASGTKSRKMNCRYFRCVKCKSQFVNPEALDHHLATSTHNYSCTSCGKVFTCERYLRRHLVTHRTAEPFKCPDCGKGFKTETYLNTHRLIHGSEKPYKCQYCNAAFIRKDKMVRHSLIHQTVKKLKCPFRTHLGCMREFNRGDKLKLHILTHSSVKPNQCRKCQVKPNQCRKCHRSFSKMTLLRQHERTQHISYVHTCISCGTSFPKKNQMRTHDCSQARTYRTKSEKQPSDTKCRRKTRSRHPIRIKQIEEINKLNDIDNIPTIEIIVVPAPEGSSVPQSLDGEELYEVMFQRQRWCYYLLLHMQTEGPH*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -