Tcri048573.1
Basic Information
- Insect
- Timema cristinae
- Gene Symbol
- L
- Assembly
- GCA_002928295.1
- Location
- PGFK01003638.1:3854354-3865197[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 3.2e-06 0.00046 21.9 1.0 1 23 116 138 116 138 0.98 2 21 0.27 39 6.4 5.9 1 23 144 166 144 166 0.98 3 21 1.4e-06 0.00021 23.0 4.1 1 23 172 194 172 194 0.99 4 21 2.3e-05 0.0033 19.2 0.2 1 23 200 222 200 222 0.98 5 21 0.0023 0.33 12.9 0.9 1 21 247 267 247 268 0.96 6 21 0.056 8.2 8.5 0.2 3 23 298 318 297 318 0.98 7 21 0.0037 0.54 12.2 0.6 2 23 354 375 353 375 0.95 8 21 0.018 2.6 10.1 0.2 3 23 385 406 383 406 0.93 9 21 0.026 3.8 9.6 0.3 1 23 411 434 411 434 0.92 10 21 2.4 3.5e+02 3.4 2.4 1 23 490 512 490 512 0.94 11 21 0.089 13 7.9 5.3 1 23 516 538 516 539 0.95 12 21 0.12 18 7.5 2.0 3 23 614 636 613 637 0.93 13 21 0.0039 0.57 12.2 4.6 2 23 654 675 653 675 0.96 14 21 0.64 94 5.2 0.5 1 23 685 707 685 707 0.94 15 21 3.7 5.4e+02 2.8 0.6 2 23 715 736 714 736 0.95 16 21 5.1 7.5e+02 2.4 0.1 1 13 785 797 785 801 0.87 17 21 3e-05 0.0043 18.8 0.1 1 23 833 856 833 856 0.97 18 21 0.2 30 6.8 0.2 1 23 860 882 860 882 0.97 19 21 0.2 29 6.8 1.4 1 23 890 912 890 912 0.96 20 21 0.0035 0.51 12.3 0.2 1 23 920 942 920 942 0.98 21 21 1.5 2.2e+02 4.1 1.7 1 23 949 971 949 971 0.94
Sequence Information
- Coding Sequence
- ATGACACGTCCTGTCCATGTTCCTCAACAAGCCTGCAGGGAAGGTCAACACCATTATAAGGTCGTTAAGAGCTCAGCTGGGGGACACTACCAACGTTACAGCAAGAAACTGTCTCAAGGTGAGGCCTCCGTGTCGCGTGACGCCCCTGGCGGCGAGAGGACCGACTCGCATTTGATCTGTGGCGGAGACTACGCGCTCGGCACGGACCCAGGGTCGTCGTGGCGCTCAGAGACGCCTGAGGACGccacctccccctcccccagctCGTGCGCGACGCCCAACTCAGCCACGGACGTGCCGGACTCAGAGCTGACGTTCACCGTGGGGGTGACAGAGTCAACGCCGTACCCTTGTCAGTTCTGCGACAAGGCGTTCCCTCGGCTCAGCTACCTGAAGAAACATGAGCAGACACACAGTGACCAGATGCCGTTCCGCTGCGAGTTCTGTAGTCGTCTGTTCAAACACAAACGGAGCAGAGACCGTCACATCAAGCTTCACACTGGGGACAAGAAGTACAGGTGTTCACACTGTGAGGCTGCCTTCTCTAGGAGCGACCACCTCAAGATACACATGAAGACACACGACAACCAGAAACCGTTCCAGTGCACTGTTTGCAACAGAGGTTACAACACTGCGGCGGCCCTTACGTCCCACATGCAGAACCACAAGAAGGAGCAACAACAGCAACACAATGGTGCCAACAGCAACAGTAGCAGCAACACGCCTAGTCCCGGCAGTTTCCGGTGTCTGCAGTGCGGCGACACTTTCCGGAAACCTGACGAGCTGCAGAGCCACCATAGAAATATCCTCTCCGACCTTATGTTCCCCTCAGTATCAACTGTGATCTGCCCCTGTCAGATGAATCAATACGACCAGCCGGGCACCCTCCTATGCAACCAATGTGGTGCAGCCTTGCCAGACTTCGAGTCGTTCCGCACCCATCTCAAGTCTCACCTGGAGGAGGCGGGAGGGCTCCGGGGTCTACTTGGGGGTGGGGGCACGGACCTGCTAGCTATGCTCGCCGCCTCCTCGGAACAACGCGTCAAGAGCCCCGCCCTACCCTGTCCCCACTGTGGCGCCAAGTTCTCCAGCCCAGAGGACCATCAACAGCACCTCGCCAGTCACTTCCTGGCCACGGCGACTGAGTACGGTTGTCAGAGCTGCCTCAAGCTGTTCTCCAAGCCTGACGAGCTGCAGAAACACCTCATGGATATCCACGCGCACCATCTCTACCGCTGTTCCCTGTGCAAGGAGATGTTCGACTCCAAGGTGGCCATACAGGTCCACTTCGCTGTGAAGCACAGCAACGAATGCAAGCTGTACCGATGCACAGCCTGCCCACTATCCTCAGCAGTGTTCCGTTCGGAGATGGACTTCGGTCTTCACGTCCGGACAATCCACCATCACCCCCCGCCGCCCCTTCCTCTGTCGCCGACCAAACTTCCCTCCTCCGCTTCTCAGCAGCAGTTTCGCTGCTTGTTCTGCCGCCTCAGCTTCCCGACTGAGCACGACATGCAGTTTCACTTGACGGTTCACTCCAAGCAGTTCCACTGTCCTTTCTGTCAAGAGGGCTTTCATGTGGAGTTCTTGTTAGACAAACACATGCAGACTCACCATACCACTCAGGTCCTGAGCAGCAGCTCATCGAATGGCGTGGACAACCCGAGTCAACAGAAATCCCCCAAGAGCAAACCTTCAAGTGGCGGCAACCCTTCAAACTCCATGGCGACTATTGGAAATAACAATACTTCCCTCAACATTAACAACAACAACTCCTCGAGAGGCTCCAGCTCAGACAATGGAGTCGCTTCCAAGATACCTGAAAGCGCCAAGAATTGCTGTGACATCTGTGACCGGCGTGACTTCGCCAGCGAGTCCGAGCTGACGGCGCACCGGAAGCTGGTGCACCACGTGAAAACCGCCGGTGCTGGTGGGGGTAAGAATGGTGCAGTCAGTCTCCACTGCGCCTACTGCAGCGAGAACTGCAAGTCCAGGACGGAACTGGAGAACCATATGAAGACTCACTCCCAGGGCAGTGGAGGTTCGGGGAAACACAAGTGCAACATCTGCGATGAGCTGTGTCCGTCGGCAGCCATCTTGGCCGAGCACAAGTTGACGCACTGCAAGGTGGTCTCCGGGAGCGTCTGCACGCAGTGCAAGTCCAATCTCGTCAGCGAGGAGCAGTTCTACTCGCACCTACAGCAGCACGGAGGGGGTGGGGCAAACAACTCTACCCACAGTCCTCAACAGGTCGCCTTACCGACGCCATGCGTCGTCTGCAGACAGACGTTGATATCCGACATTGAGGTCCGCATGCACGCCCGGTTTCACCTGAAGAACTCCGAGCCGACCTACCAGTGCTTCCTGTGCCTGAAACAGTTTGAGTCCCAAAACCTGGTGGTGGCCAACGGAGGCCACCAGACCGCCACCTACGTGTGCAAGGAGTGCTACCACTGCCACAGTAAGACGTCGCCGTCCCCAGGCCAGGAGCAGGCGTTCAGATGTCCAGAGTGCCAGGTCAAGTTCGAGACGAGCTCTGCGCTGGAGGCTCATTTAGTGACCGTCCATAAGAAAACCTACCAGTGCATCAAGTGCCAGATAAGTTTCGAGACTGAACGCGAGATCCAGCTTCACGTGGCTACCCACCTGCTGACTGAGGGCAGCAGCCACGAGTGCCACCTGTGTCGCCGCCTGCTGTCCACACCACTTAAGTTGCAGGCCCACCTCATAGAGCACACCTTCGCGGGCTGCGGCAGCTACACCTGCTACCTGTGCAGCGCGGTCTTCACGGCATCCCAAGGCCTGCAGCAGCACATGCTAGAGCATGGCCTGGCGGCCAGGCCTTACGACTGCTCCAGGTGTAGCCTGCGGTTCTTCTTTAGAGCGGAGCTGGACAACCACAGCTACAGCCACCTGGAGGAGGCTATGGTTGAAGGTTCCGGGGCGCTAATAGATGGAGGCGACCTGGCTACCAAGGCTGCGTTTTACCATCATCTGACCACAAACGGCTCCTACGACCCTTCGCCCGATCTACAGTACTACAAGACTTTGAGACAAGACCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGTGGCCTCCTTGTCGGCTCCTCCCGCCGCGGAGGAGCACTACGGACCGGGTCTGGACGAGGCGTCGGTGGATGTTGTGGGGGACGCCTCGTCCTTCAATGGAGACACGCGTAAGGACGACTCGTCGACGAATCAGAGTGAGGTGAACAATTCCGTCACTTCCTGTGAAGACAGTGATGACGTGGACAAGCGACAGTAG
- Protein Sequence
- MTRPVHVPQQACREGQHHYKVVKSSAGGHYQRYSKKLSQGEASVSRDAPGGERTDSHLICGGDYALGTDPGSSWRSETPEDATSPSPSSCATPNSATDVPDSELTFTVGVTESTPYPCQFCDKAFPRLSYLKKHEQTHSDQMPFRCEFCSRLFKHKRSRDRHIKLHTGDKKYRCSHCEAAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQNHKKEQQQQHNGANSNSSSNTPSPGSFRCLQCGDTFRKPDELQSHHRNILSDLMFPSVSTVICPCQMNQYDQPGTLLCNQCGAALPDFESFRTHLKSHLEEAGGLRGLLGGGGTDLLAMLAASSEQRVKSPALPCPHCGAKFSSPEDHQQHLASHFLATATEYGCQSCLKLFSKPDELQKHLMDIHAHHLYRCSLCKEMFDSKVAIQVHFAVKHSNECKLYRCTACPLSSAVFRSEMDFGLHVRTIHHHPPPPLPLSPTKLPSSASQQQFRCLFCRLSFPTEHDMQFHLTVHSKQFHCPFCQEGFHVEFLLDKHMQTHHTTQVLSSSSSNGVDNPSQQKSPKSKPSSGGNPSNSMATIGNNNTSLNINNNNSSRGSSSDNGVASKIPESAKNCCDICDRRDFASESELTAHRKLVHHVKTAGAGGGKNGAVSLHCAYCSENCKSRTELENHMKTHSQGSGGSGKHKCNICDELCPSAAILAEHKLTHCKVVSGSVCTQCKSNLVSEEQFYSHLQQHGGGGANNSTHSPQQVALPTPCVVCRQTLISDIEVRMHARFHLKNSEPTYQCFLCLKQFESQNLVVANGGHQTATYVCKECYHCHSKTSPSPGQEQAFRCPECQVKFETSSALEAHLVTVHKKTYQCIKCQISFETEREIQLHVATHLLTEGSSHECHLCRRLLSTPLKLQAHLIEHTFAGCGSYTCYLCSAVFTASQGLQQHMLEHGLAARPYDCSRCSLRFFFRAELDNHSYSHLEEAMVEGSGALIDGGDLATKAAFYHHLTTNGSYDPSPDLQYYKTLRQDPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVASLSAPPAAEEHYGPGLDEASVDVVGDASSFNGDTRKDDSSTNQSEVNNSVTSCEDSDDVDKRQ*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -