Basic Information

Insect: Timema cristinae
Gene Symbol: -
Assembly: GCA_002928295.1
Location: CM009473.1:49567924-49572502[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.038 5.5 9.1 0.1 2 23 165 186 164 186 0.96

2 11 0.00048 0.071 15.0 0.5 1 23 192 214 192 214 0.95

3 11 0.0079 1.2 11.2 5.3 1 23 220 242 220 242 0.98

4 11 3.3e-06 0.00048 21.8 2.8 1 23 248 270 248 270 0.98

5 11 0.055 8.1 8.6 0.9 1 23 285 308 285 308 0.92

6 11 3.3e-05 0.0048 18.7 4.7 1 23 314 336 314 336 0.99

7 11 1.9e-05 0.0028 19.4 1.4 1 19 342 360 342 364 0.96

8 11 0.015 2.1 10.4 5.9 1 23 370 392 370 392 0.97

9 11 3.2e-06 0.00046 21.9 0.2 1 23 398 420 398 420 0.96

10 11 0.00015 0.022 16.6 2.5 1 23 426 448 426 448 0.98

11 11 0.00041 0.059 15.3 5.7 1 23 455 477 455 478 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.038	5.5	9.1	0.1	2	23	165	186	164	186	0.96
2	11	0.00048	0.071	15.0	0.5	1	23	192	214	192	214	0.95
3	11	0.0079	1.2	11.2	5.3	1	23	220	242	220	242	0.98
4	11	3.3e-06	0.00048	21.8	2.8	1	23	248	270	248	270	0.98
5	11	0.055	8.1	8.6	0.9	1	23	285	308	285	308	0.92
6	11	3.3e-05	0.0048	18.7	4.7	1	23	314	336	314	336	0.99
7	11	1.9e-05	0.0028	19.4	1.4	1	19	342	360	342	364	0.96
8	11	0.015	2.1	10.4	5.9	1	23	370	392	370	392	0.97
9	11	3.2e-06	0.00046	21.9	0.2	1	23	398	420	398	420	0.96
10	11	0.00015	0.022	16.6	2.5	1	23	426	448	426	448	0.98
11	11	0.00041	0.059	15.3	5.7	1	23	455	477	455	478	0.95

Sequence Information

Coding Sequence: ATGGAACCAGCTCCTTACGCCGGAATAGTTCCCGTCACGGATATCAACTCGGAACTGTTTCCGGCAGAGATAGAAATTAAAGAGGTGTGTTTCTTTTTTGATCTGCGTCTCggtgtattaattacgctgcTGATGGGTTCTCCACTTGTTTGCAAATGCTGTAAGGCCGCCTGCGAGAGTGTGTTCTGTTGGTCGGAACATTGCGACAACTGTCGCGCTACCAAGGAAATGTTTGTGGTGATCAAGGACCTAAGTTCGGCCGGTGGAGACTACGACTGGTCGACAGTGAACCTTTGTTTGGTCGGCACAGACAACGATTGGTCAAACGAGCACAGCGAGTCGTCTAATTCGAAGGAAAGTGTCGGCAACAGTTTCAGAACAAACGAGACCTTGGACAGGTCGAACCAGGAAACTAATGACTGGGAGATTTCTTCCTCAAGTGATTATTCCTCAGAGGTCTCTGGACTGATTTACTCCAACTCTGATGACAAACGCTGTAGGTACTGTGGAGTCATAATCCCCCAACTGGAGGAACTTGCGCGTCACCTCACGCAGCACTACAAAGAAAAACCGTTCTTGTGCAACGTGTGTGGGGCGATATTCAAACTTAAAACGCAACTCAATGTGCATACGTTCACACACACaagagaaaacatatttacatgtGACATTTGTAAATCTGGGTTCTATACAAAGGGTCACCTGAGGTGCCACATGCTAACGCACACCGGCGAGCGCCCGTACGAGTGTTCCACCTGTGGTGCCCGTTTTAATCAAAGCGCGCACTTGAAGAGACACATTCATGTCCACGACTCGAATCGACCAAAGAAAAGAGCCCCCAGGGCTAAGAAGTATTTTTGCGAGAAGTGTGATGCCAAGTTTACTACGGTAGCGAGTAGCAAGTTACACATGTTGTACACCCATGAAGGTTTGGTGAAATACTCTTGTTCACACTGTAGCGCCGAATTTTACCACAAGGCTAACCTCAACTCTCACCTAAGAACGCACACTGGCGAACGTCCATTTCGTTGTACGGTTTGTGATGTCAGCTTCAAGCAAAGCTCCCACCTCTTGAGACATTCCTGGATACACTCGGGTAAAAAGCCCTATCCCTGTACGTTCTGCGACATGTCGTTCAGACAGAAGTTCTCTTTGAAGTGCCACACGTACACTCATACCGGGGAGAAGCCGTACGAATGCCCGGTCTGCGGGAAGCGGTTCCGATCGCCGGGTGACATGAGTAAACACAAGGTCTCTCATACGAATCAGAAGCTGTTTAGCTGCATGCTTTGTGACCGAACTTTCTTCTACAAAGTCTCGTTGAAAAACCACATCTTCACACACACGGGAGAGTCAAAGAGACACACCTGCAATACTTGCGGCAATagtttttccaataaaaattcaCTTTACCGTCACGAGTCCTCACATCATCCAAAGGATGATACAGTTAAGGGACAGTCTTGA
Protein Sequence: MEPAPYAGIVPVTDINSELFPAEIEIKEVCFFFDLRLGVLITLLMGSPLVCKCCKAACESVFCWSEHCDNCRATKEMFVVIKDLSSAGGDYDWSTVNLCLVGTDNDWSNEHSESSNSKESVGNSFRTNETLDRSNQETNDWEISSSSDYSSEVSGLIYSNSDDKRCRYCGVIIPQLEELARHLTQHYKEKPFLCNVCGAIFKLKTQLNVHTFTHTRENIFTCDICKSGFYTKGHLRCHMLTHTGERPYECSTCGARFNQSAHLKRHIHVHDSNRPKKRAPRAKKYFCEKCDAKFTTVASSKLHMLYTHEGLVKYSCSHCSAEFYHKANLNSHLRTHTGERPFRCTVCDVSFKQSSHLLRHSWIHSGKKPYPCTFCDMSFRQKFSLKCHTYTHTGEKPYECPVCGKRFRSPGDMSKHKVSHTNQKLFSCMLCDRTFFYKVSLKNHIFTHTGESKRHTCNTCGNSFSNKNSLYRHESSHHPKDDTVKGQS*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01450886;
90% Identity: iTF_01448894;
80% Identity: -