Basic Information

Insect: Timema cristinae
Gene Symbol: -
Assembly: GCA_002928295.1
Location: CM009480.1:4519184-4528959[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.06 8.8 8.4 1.2 5 23 184 202 180 202 0.92

2 9 3.1e-05 0.0046 18.8 4.8 1 23 208 230 208 230 0.97

3 9 3.7e-07 5.4e-05 24.8 0.4 1 23 236 258 236 258 0.98

4 9 6.4e-07 9.4e-05 24.1 0.8 1 23 267 289 267 289 0.98

5 9 1.4e-07 2e-05 26.2 0.2 1 23 295 317 295 317 0.99

6 9 6.8e-06 0.00099 20.9 2.6 1 23 323 345 323 345 0.97

7 9 4.8e-05 0.007 18.2 3.2 1 23 351 373 351 373 0.98

8 9 0.043 6.4 8.9 0.7 1 13 379 391 379 394 0.90

9 9 0.0023 0.34 12.9 5.5 3 23 427 448 427 448 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.06	8.8	8.4	1.2	5	23	184	202	180	202	0.92
2	9	3.1e-05	0.0046	18.8	4.8	1	23	208	230	208	230	0.97
3	9	3.7e-07	5.4e-05	24.8	0.4	1	23	236	258	236	258	0.98
4	9	6.4e-07	9.4e-05	24.1	0.8	1	23	267	289	267	289	0.98
5	9	1.4e-07	2e-05	26.2	0.2	1	23	295	317	295	317	0.99
6	9	6.8e-06	0.00099	20.9	2.6	1	23	323	345	323	345	0.97
7	9	4.8e-05	0.007	18.2	3.2	1	23	351	373	351	373	0.98
8	9	0.043	6.4	8.9	0.7	1	13	379	391	379	394	0.90
9	9	0.0023	0.34	12.9	5.5	3	23	427	448	427	448	0.98

Sequence Information

Coding Sequence: atggcCGAACTGAGTAATTTATGTCGTTTGTGCGCTGTTAAGGTTGATGATTATATAGGGATTTATGAGGAAGAGGGCCACAAATTAAGTCTCGAAGTTAAAATAacgaaatatttacaaatagagGTGAAACCCAGGGACTCGCTACCCAAGGCAGTGTGTCTGGACTGCTGTACCAAGTTGGACCAGTGCTCTCATTTCCACGAGTCCAGCCTTCAGGCCCAGCTGACGCTACAGATGATCTTCCTGCCCAAATTGGACCACGTGGTTCAGCAACATTTGACGTCCATCGGTAAAGTCGAGGATGTGTTGCAGCAGACGCAACCAGTGGAGTTTAACCATTTCGACCATGACACCAGCTCAATGCTTGGGGAAGAGtttCAGGAACCAAACCTGGACCCCACTCCGCCGGTGTATGTAGAGTGTGTACTCTCAGACAACCACAATAATGCCAATTCCCTCAGTAAGTACAAAGAACTGCCGAGCATGCAAGCTTTGAGAAGCCACCACCAGGAGGTCCACAAACAGACAGTGCGCTTCCTCTGCATCCAGTGCAAGAAGGTTTACACCAAGTATTATGGCTTTGTCAGCCACGTTCGCAGACACAAGAACCACATGAAGTTCTGcTGTGAGGAATGTGGCAAGTGCTTCTCCAACAAGAAGGTGCTAGAGTCCCACCGCGCCACACACTCGGACGCTCGGCCATACGTCTGCAGTGAGTGCGGTAAAGCCTTCAGGCAGCAGAGCGCGCTGTACGTTCACAACCGCTCGCATCAACCCGACGAGGTCAAGAACAAGTACCCTTGCGACCAGTGCGACAAGAAGTTCTCGACGAAGCCCAACCTGGTGACTCACAAGAGGATCCACACAGGGATACGGAACTACACTTGTGACCAGTGCGGCAAGTCCTTCATCCAGAAGGGGAACCTGGACGCTCACCTCCTCACACACTCGTCGGACAAACCTCACACCTGTACCATATGCAACAAGGGGTTCAAGACTCCCCTGCAACTGCGGAAACACCAAACCGTGCACACGGGCGCCAAACCACATCAGTGCGACGTGTGTGGTCGGCAGTTCAGGGAGCGAGGGACCCTCAGGGAGCACCATCGCATCCATACCGGGGCCATGCCCTTCACTTGCGAGTTTTGTGGCAAGGCGTTCCGCTTCAAGGGCATCCTTACGCTTGTTGACCAGTCTCCTGTCTCTCGTATGCACCCGACCTGGTTTCCGCTGGGGTTCAACCCACCCTCCACCAGGTTACTCGGATCACCGGGCTGTCTCGAGTGTCAGCATCACTTCACCAACTGGCCCAACTACAACAAACACATGAAGAGACGTCACGGGATCAACACGAGCCACCAACCCGACCCCAACAAGCTTGCCCTCGCCAACATGGCGAACCTccaacagcaacaacaacatCAACAGCAACATCCCCAACAGCATCACCACAACAATGTCGCCACTACACCCGACCACCTCGGGCCTGACCTCTCTCTCTATGAAGATGACCGGGAGAGGGGCCCCGCCTCCTCCACGCACTTCTACGCGGCGGCCGCGGGTCTTCCCAGCGTGGGCGCGTACATGGGTGCCCCTTTGAACGCCTCCTCCATGTTGGGGTTTTATAACATTCCCCAGTTGCAAGGGTTAGACCCTTCTGCCATGGACATGTTGCACCCCTTACAGCATCGGTAG
Protein Sequence: MAELSNLCRLCAVKVDDYIGIYEEEGHKLSLEVKITKYLQIEVKPRDSLPKAVCLDCCTKLDQCSHFHESSLQAQLTLQMIFLPKLDHVVQQHLTSIGKVEDVLQQTQPVEFNHFDHDTSSMLGEEFQEPNLDPTPPVYVECVLSDNHNNANSLSKYKELPSMQALRSHHQEVHKQTVRFLCIQCKKVYTKYYGFVSHVRRHKNHMKFCCEECGKCFSNKKVLESHRATHSDARPYVCSECGKAFRQQSALYVHNRSHQPDEVKNKYPCDQCDKKFSTKPNLVTHKRIHTGIRNYTCDQCGKSFIQKGNLDAHLLTHSSDKPHTCTICNKGFKTPLQLRKHQTVHTGAKPHQCDVCGRQFRERGTLREHHRIHTGAMPFTCEFCGKAFRFKGILTLVDQSPVSRMHPTWFPLGFNPPSTRLLGSPGCLECQHHFTNWPNYNKHMKRRHGINTSHQPDPNKLALANMANLQQQQQHQQQHPQQHHHNNVATTPDHLGPDLSLYEDDRERGPASSTHFYAAAAGLPSVGAYMGAPLNASSMLGFYNIPQLQGLDPSAMDMLHPLQHR*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01446875;
90% Identity: -
80% Identity: -