Tcri013088.1
Basic Information
- Insect
- Timema cristinae
- Gene Symbol
- Bcl11a_1
- Assembly
- GCA_002928295.1
- Location
- CM009477.1:49513178-49531089[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00015 0.022 16.6 0.6 2 23 39 59 38 59 0.98 2 15 0.00026 0.037 15.9 0.8 1 23 65 87 65 87 0.98 3 15 1.3 1.9e+02 4.3 0.1 9 23 90 104 88 104 0.90 4 15 0.00011 0.017 17.0 0.1 3 23 112 132 111 132 0.97 5 15 1.4e-05 0.002 19.9 1.1 1 21 138 158 138 159 0.95 6 15 0.00021 0.031 16.2 2.2 1 23 245 267 245 267 0.95 7 15 0.00061 0.089 14.7 1.3 1 23 273 295 273 295 0.98 8 15 0.02 3 9.9 0.4 2 23 302 323 301 323 0.95 9 15 0.00047 0.069 15.1 2.7 2 23 330 351 329 351 0.97 10 15 0.00025 0.036 15.9 1.8 1 23 357 379 357 379 0.96 11 15 0.0039 0.58 12.2 0.3 3 23 390 409 389 409 0.98 12 15 3.9e-06 0.00057 21.6 0.6 1 23 414 436 414 436 0.98 13 15 0.00018 0.026 16.4 2.1 1 23 442 464 442 464 0.96 14 15 1.8e-05 0.0027 19.5 4.0 1 23 470 492 470 492 0.97 15 15 0.00025 0.036 15.9 3.4 1 23 498 520 498 521 0.95
Sequence Information
- Coding Sequence
- ATGTGCCTCTACATTCAACTCATCCTGCCAACTATGGGATCCCCAGCCAAATCTCGCCAAAAGTGTGTCAGGAAAGTGAAGCGAAGATCACCCAAGAAAAGGCGTGATAGTGGCAAGTGTGAGTTCTGTGGTAAAGGATTTGTTCAAAGTAAGCTGGAGATACATAGGCGCACACATACGGGCGAACGCCCTTTCATGTGTAGTTCCTGCGGCATCACGTTTCTTAGCAACGGCAAGCTCAAATCACACATGAACACCCACAGCGAGTCGCTGTCGAGTAAGGCGTCGCTCATTGTGCATGAACGCACACACACTGGAGAGAAGCCAAACATTTGTGGAACGTGTGGCAAGGCGTTTGCATCGGTAGAGTATCTGAAGATCCATGAGCGTAGACACACCGGAGAGAAACCTCATCGTTGTGATGAGTGCGGGAAATATTTCACTCAGCGCTCGTCGCTCAGCATTCACAAGAGATGGAAGAAAAAAACTAAGTCTGGTAACTTAACTCGAACGAACAAGAACACGTCTCTGAAGTTAAGCCGTAAGGTCAAGAAGTCGGTGAAGGCAACGCGCTTGCCTCGGCTTAGACGTAATGATAAGGAAGTTAAGGGTAAAGTATCAAAAACGGACCAAGGAGGTGATCTAGAAACAGACCCTGGGGTCAACCTGTGGTATAGTATCTACGACATGTACAGGAAGATGGAATCAAGCGCTGCGCTTGCCAATGGCAAGTATCTCTGCAACATATGTGGTAAAATCTGTTCGAGCAAGACTAGTTTCAGGTATCACTTGGAGATTCACAGCGAGGTGCCCAAGTATAAATGTGACGTTTGTGACAAGCAGTTTCAAACATACCCTAGACTCTTCAATCACAGGTTAATTCATAGAAAGAGTAAAGATCAAGTTTGCGATGTGTGTGGTTACTGCACTTACTATAAGGCTGCTCTGGATATACACAAGATGCTGCATTCACAGAAGTTTAAACTTTACTGTGAGATTTGCAGCAAGGGTTTCAAGTCAAAATGCTATTACGACGACCACATGAACACGCACACTGGTAACAACCCGTATATTTGCGATATATGCGGGAAGGCGTTCCCTTGCAAGAGCAACTTGGCCAACCATAAGATTCACCACAAACCCGGCTATAAGCCTTACAGCCGCCTTTGCGAGATCTGCGGTATAAGCGTTCAGCGCTCGAGCTACGAGAGCCATCAGCGGCGTCACAACAACGAGATGTATGATTGCGACATTTGCGGCAAGAAGATAACGAAGAAGAACTCTCTGATCACGCATATGCGTATGCACATGAACGACAAACCCCATGCTTGCGAGTTTTGCGGCAAGATGTTCGGCTCGACACGTTATCTCCGCCTTCATCGCCGCGTTCACACCGGCGAGAAGCCTCACATGTGCCAGTTCTGTCAGAAGAGTTTCTCTCAGCGGTCGTCTCTCATCATTCACACAAGGAACCATACCGGCGAGAAGCCCTATACTTGCGACATTTGCAATCATGGGTTTGTTAGCAGAAATCAGTTGACCAATCACAACCGAGCTCATCATTCTGAGCAGTCTCAGAAGTACAGGAAGTTTCTTGTTAACGACGAGAGAACTCTTACAGATAACTCTTTAGTTTAA
- Protein Sequence
- MCLYIQLILPTMGSPAKSRQKCVRKVKRRSPKKRRDSGKCEFCGKGFVQSKLEIHRRTHTGERPFMCSSCGITFLSNGKLKSHMNTHSESLSSKASLIVHERTHTGEKPNICGTCGKAFASVEYLKIHERRHTGEKPHRCDECGKYFTQRSSLSIHKRWKKKTKSGNLTRTNKNTSLKLSRKVKKSVKATRLPRLRRNDKEVKGKVSKTDQGGDLETDPGVNLWYSIYDMYRKMESSAALANGKYLCNICGKICSSKTSFRYHLEIHSEVPKYKCDVCDKQFQTYPRLFNHRLIHRKSKDQVCDVCGYCTYYKAALDIHKMLHSQKFKLYCEICSKGFKSKCYYDDHMNTHTGNNPYICDICGKAFPCKSNLANHKIHHKPGYKPYSRLCEICGISVQRSSYESHQRRHNNEMYDCDICGKKITKKNSLITHMRMHMNDKPHACEFCGKMFGSTRYLRLHRRVHTGEKPHMCQFCQKSFSQRSSLIIHTRNHTGEKPYTCDICNHGFVSRNQLTNHNRAHHSEQSQKYRKFLVNDERTLTDNSLV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -