Tcri024314.1
Basic Information
- Insect
- Timema cristinae
- Gene Symbol
- -
- Assembly
- GCA_002928295.1
- Location
- CM009479.1:102515498-102527797[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00061 0.089 14.7 0.4 1 23 383 406 383 406 0.97 2 14 0.00041 0.06 15.2 1.1 2 23 431 452 430 453 0.94 3 14 0.0012 0.18 13.7 0.5 3 23 460 480 459 480 0.97 4 14 0.00037 0.054 15.4 4.2 1 23 486 508 486 508 0.98 5 14 4.3e-07 6.3e-05 24.6 0.7 2 23 515 536 514 536 0.96 6 14 1.2e-05 0.0017 20.1 0.7 3 23 544 564 543 564 0.99 7 14 2.9e-06 0.00042 22.0 1.4 2 23 571 592 570 592 0.94 8 14 0.00043 0.063 15.2 1.0 1 23 598 620 598 620 0.98 9 14 8.4e-06 0.0012 20.6 2.5 1 23 626 648 626 648 0.98 10 14 0.091 13 7.9 0.6 1 23 663 685 663 685 0.97 11 14 0.0026 0.38 12.7 0.1 1 23 692 714 692 714 0.97 12 14 5e-06 0.00073 21.3 0.7 1 23 720 742 720 742 0.96 13 14 9.9e-06 0.0014 20.3 1.1 1 23 748 770 748 770 0.98 14 14 1e-06 0.00015 23.5 2.2 1 23 776 798 776 798 0.98
Sequence Information
- Coding Sequence
- ATGAGTAATCGTAGATGTGCTGCAAGAACGTGCTTTAATATGCAAGGATGTCGTCctaaccttaaattatttccatttcCTAAGGATGAAATAGCAATGCGGGAATGGGCAAAAAACTGTGGCAGATCGGATCTCTGTAAACTTCCCTCTGAAAAACTGAGCAAATTCCGTCTGTGTGCCAACCACTTTGAATTGCACTGGTTTCTTAACCCCAAATACAAGACAAGGTTCAAGCCTTCTCTCCAGCCTATCccaacaatattttacaataaccTAAGAGATTTTGTCCCAAAATCTCTGCAAAATTCGTGTCCGCTTTCGAACGAAGTTCAGAAAATTGATGAAAACATTGAAGAAGTTGTCCAGCTCGAAATTCCTACAGAAGCCAACAGTCCAGAAGTTTTGAGTGCTTGCAGTGTGGTGTCTGACATCAGCGAAAAGATGTGCCGGCTATGCGCACAGCTGGTACACGAGACTAAGTTGATTGACATCTTTTCACAAGAGGAGACCGATCTTGTCTCAAAAATCAACAAATTCTTGCCAGAAAAGATATCGGTGGATGATGGCCTACCAGCTCACGCGTGTACTTCATGTGTCCACAAGTTGAATGATTGTGACGAAGCTGTCTCGCTATTCATTTCTGCGGACAGGAAGCTGAGGACCCTTTTTCACAATGGTGATGAGAGTACTTCACAAATTCTGGCCAAGATACCTGTCATCATTGACGAGGACCACCGGCTGCCCGTTCGATTGGAGACATTTGGGGGCTCAGAGCAAACCTACACAATCACTAATGCAGATAATTTACCAGTTCAGTATATTGATGAGGAGTTTCAAGATCAGTTAACACAAAATGGCAGTAAAgtctatgtaatatttaaaaaagattatgtGGCTTCAGACATAAATGCTGAAGATTCAAGACCAGGAAGTATGTTTGAAGGCGAAGAGTTTGAAGTGCTCAGCCGGGAGGAACTTGAGTCAAGAGAAGCAGAGGGTTGCTGTGAAAACGAGAGTTGTGACTTTGTGCAGGGAGATTTCGGACATCTCGTCAGCGTATCTCTTGGTAGGGAGACGGAAGCCGAAACAGCACCAGCTGAAGATGGAGTAGTCATCAAGAACATTTCAACAACTGAGGTTAAACAATATAGATGTTTAAACTGCGATCAAACCTTTAATGAAAATAGTAAGTTATTGATTCATGAAATAACTGAACACATTGTTGAAAAACAAACCAAGACTAATGATGAGTCGCTCGTGTCCCACATACGATACAGACGAGAGAAGATGGAGTGCAAGGAATGTGGAAGTGTGTTTAATGGGAGGAAACCTTTGAAGAAACATATTCGAGAGCATCACATCCCAGCAGAAAATATTTGTCCCTTCTGTGGTgctcactataaaataaaaagtcaattGCTTGTTCATCTCCGTTTACACACAAACGAAAAACCGTTTGTGTGTTCTGTTTGCACTGAAACATTCCACTTCAAAAAAGAGCTTCGTAGGCACAAACGTATTCATCTCGTATCAAAATCATTGATGTGTCATATCTGTGATAAGTCATTCACCAACAGGGCAGCTTTGTGGCGACATGCCAGGATTCACACCATCAACAGGAACGTACTTTGTTCTCAGTGCGGTAAAATTCTCTCCAACTCACAGAGTCTCAGAGTGCACATGAGGACTCACTCAAGTGACCGTCCCTGCTCGTGTCCCACATGCGGCAAAAGTTTTAAGGACAATGCTTCTCTCACCAGGCACGAAGTGATGCACTCTGCTTTGAGGAATTTCAGGTGTGATATATGCCAGCGAGCGTTTTATAGCAAAGCTCTGGTGAAACAGCATAAATTGAGCCACTCTGGTGTAAAACCTCACAAGTGCAATGTGTGTGGCGCATCCTTCAACAGGCTGGGCAACTTGAACCAGCACAAAAAGAAACATGTTGACTCAGACGGTAAGACTGAGTCCAAGAATGAGATTGCTTACGAGTGTGTAGTTTGTAACAAACGAATGCGGTCCGAGCTGACCCTTAAATATCACCTTGCAAAACACACTGGGGAAAAGAAACCATTTGATTGTACAGCTTGCGGCAAACGATTTACTGCAATAGAGCCGTATCGCGTACACATGCGTATCCATACAGGTGAGCGCCCATATGTCTGCAACACATGTGATAAGGATTTTCGCAGTGCTTATACGCTTAAGCAGCACATGGGACTTCACAAAGATGAGTGCCCATACCCTTGTCCGTTTTGTGAGCGACGGTTCAAGAGGTTGCAGTCGCTCATTGTTCACAAGCGTACCCATACGGGAGAGAAGCCTCATCAGTGTTCCGAGTGCGGCCGGCGCTTTGCTCAGAAAGGGGATATGTTGAAGCACATGAAGACTCACTTTCGAGACCAACCTTATTTGGGCAGCCAAGTCCCTGAGGAAATGGTTCTGGAGATAGACAATATTGCAGAGTTTGCGCTCAGTGACACAGACATGACCAACGAGTTTCTCATCGACATGCCTATTGTAGAGGTGGAAACAGAGTTGCACTGA
- Protein Sequence
- MSNRRCAARTCFNMQGCRPNLKLFPFPKDEIAMREWAKNCGRSDLCKLPSEKLSKFRLCANHFELHWFLNPKYKTRFKPSLQPIPTIFYNNLRDFVPKSLQNSCPLSNEVQKIDENIEEVVQLEIPTEANSPEVLSACSVVSDISEKMCRLCAQLVHETKLIDIFSQEETDLVSKINKFLPEKISVDDGLPAHACTSCVHKLNDCDEAVSLFISADRKLRTLFHNGDESTSQILAKIPVIIDEDHRLPVRLETFGGSEQTYTITNADNLPVQYIDEEFQDQLTQNGSKVYVIFKKDYVASDINAEDSRPGSMFEGEEFEVLSREELESREAEGCCENESCDFVQGDFGHLVSVSLGRETEAETAPAEDGVVIKNISTTEVKQYRCLNCDQTFNENSKLLIHEITEHIVEKQTKTNDESLVSHIRYRREKMECKECGSVFNGRKPLKKHIREHHIPAENICPFCGAHYKIKSQLLVHLRLHTNEKPFVCSVCTETFHFKKELRRHKRIHLVSKSLMCHICDKSFTNRAALWRHARIHTINRNVLCSQCGKILSNSQSLRVHMRTHSSDRPCSCPTCGKSFKDNASLTRHEVMHSALRNFRCDICQRAFYSKALVKQHKLSHSGVKPHKCNVCGASFNRLGNLNQHKKKHVDSDGKTESKNEIAYECVVCNKRMRSELTLKYHLAKHTGEKKPFDCTACGKRFTAIEPYRVHMRIHTGERPYVCNTCDKDFRSAYTLKQHMGLHKDECPYPCPFCERRFKRLQSLIVHKRTHTGEKPHQCSECGRRFAQKGDMLKHMKTHFRDQPYLGSQVPEEMVLEIDNIAEFALSDTDMTNEFLIDMPIVEVETELH*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01446669;
- 90% Identity
- iTF_01445732;
- 80% Identity
- iTF_01445732;