Basic Information

Insect: Timema cristinae
Gene Symbol: -
Assembly: GCA_002928295.1
Location: CM009482.1:37805211-37818003[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 2.4e-05 0.0035 19.1 0.8 1 23 17 40 17 40 0.97

2 18 0.0041 0.6 12.1 0.5 1 23 50 72 50 72 0.97

3 18 0.00012 0.018 16.9 1.6 1 23 78 100 78 100 0.97

4 18 2.1e-06 0.00031 22.4 0.3 1 23 106 128 106 128 0.98

5 18 0.0064 0.93 11.5 4.3 1 23 134 156 134 156 0.92

6 18 6.6 9.6e+02 2.0 0.0 10 23 164 177 161 177 0.83

7 18 7.4e-05 0.011 17.6 1.1 1 23 183 206 183 206 0.98

8 18 0.0056 0.81 11.7 1.0 1 23 216 238 216 238 0.98

9 18 3.3e-05 0.0048 18.7 2.1 1 23 244 266 244 266 0.98

10 18 4.4e-06 0.00065 21.4 0.6 3 23 274 294 273 294 0.97

11 18 0.0015 0.23 13.4 4.9 1 23 300 322 300 322 0.95

12 18 0.0001 0.015 17.1 0.3 2 23 349 370 348 370 0.97

13 18 1.1e-07 1.6e-05 26.5 1.3 1 23 376 399 376 399 0.98

14 18 6.2e-05 0.0091 17.8 0.5 1 23 409 431 409 431 0.96

15 18 4.7e-05 0.0069 18.2 2.2 1 23 437 459 437 459 0.97

16 18 0.00016 0.023 16.6 5.3 1 23 465 487 465 487 0.98

17 18 4.1e-07 6e-05 24.7 0.7 1 23 493 515 493 515 0.98

18 18 0.00066 0.097 14.6 1.5 1 23 521 543 521 543 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	2.4e-05	0.0035	19.1	0.8	1	23	17	40	17	40	0.97
2	18	0.0041	0.6	12.1	0.5	1	23	50	72	50	72	0.97
3	18	0.00012	0.018	16.9	1.6	1	23	78	100	78	100	0.97
4	18	2.1e-06	0.00031	22.4	0.3	1	23	106	128	106	128	0.98
5	18	0.0064	0.93	11.5	4.3	1	23	134	156	134	156	0.92
6	18	6.6	9.6e+02	2.0	0.0	10	23	164	177	161	177	0.83
7	18	7.4e-05	0.011	17.6	1.1	1	23	183	206	183	206	0.98
8	18	0.0056	0.81	11.7	1.0	1	23	216	238	216	238	0.98
9	18	3.3e-05	0.0048	18.7	2.1	1	23	244	266	244	266	0.98
10	18	4.4e-06	0.00065	21.4	0.6	3	23	274	294	273	294	0.97
11	18	0.0015	0.23	13.4	4.9	1	23	300	322	300	322	0.95
12	18	0.0001	0.015	17.1	0.3	2	23	349	370	348	370	0.97
13	18	1.1e-07	1.6e-05	26.5	1.3	1	23	376	399	376	399	0.98
14	18	6.2e-05	0.0091	17.8	0.5	1	23	409	431	409	431	0.96
15	18	4.7e-05	0.0069	18.2	2.2	1	23	437	459	437	459	0.97
16	18	0.00016	0.023	16.6	5.3	1	23	465	487	465	487	0.98
17	18	4.1e-07	6e-05	24.7	0.7	1	23	493	515	493	515	0.98
18	18	0.00066	0.097	14.6	1.5	1	23	521	543	521	543	0.98

Sequence Information

Coding Sequence: ATGCGAGCAGTTCGCGCTCATCACAGGACTCACAAAAGTAAGAAGCCATTTAAATGTGACTTGTGTGGGACCACTTATATTTACAAGAGCAATCTTGACATACACTTGAAGAACTCCCACCCTGGCTTAAAACTTGAGAAGAAATTGTTTTCGTGCCAGTTTTGTGACAACATCTACGCCACTTCTAAGTCTCTACGACTTCACGTGGCGAGCCATTTAGGAACCAACGTCTTTATCTGCGACATCTGCGGCAAGTCGCTCACTAACCTCGATCACCTCAAGTTCCACAGGCGAATACACACCGGGGAAAAACCATATATTTGTGATTTCTGTGGGAAAGGTTTCATTAAGAGCGGTAATCTAACTCTACACAGACGAGTCCATACTGGCGAGAGGCCGTACCAATGTGATACGTGTGGGAAGGCCTTCTCGCAGCGTTGCACAATCATTATACACTGCCGACAGCATTTAGGGCTGAGACCGTACGGCTTCGGTTCTTTGCAGGAGGTTCAAGCCCACCGCCGGACTCACGGCGATCAAAAGCCATTCAAATGTGACTTGTGTGGATCAACCTATGCCTACAAGAACAATCTTTACACGCATTTGAAGACTGTCCACTCTAACATCAAACCAGAGAAGAAATCTTATCCATGTAAGTTTTGTGCCAAGATCTACGCAAACACAAAATCTCGAAGGCGTCACATGGCAAGTCACTTAGGAACCAATGTTTACATATGTGACATCTGCGGGAAGTCCCTCACTAACAAGGACCACCTCAAGTTCCACCGCCGGATACACACCGGAGAGAAACCTAATATCTGCGACTTTTGCGGCAAAGGTTTTTCGAAACGAGGTAACCTGACGTTACACAGACGCGTCCATACCGGTGAACGACCTTATCAGTGTGACACGTGTGGTAAAGGTTTCTCTCAGCGTTGTACCCTCGTCATTCACTGTCGGCAACATTTGGGGCTGAGGCCGTATGTCAAGCATGAAATTGGACTCAAATTACACCAAGACAAACTGAACCACAAAATTAGACTTCGCTGCAATATATGCGACAAAGGCTTTACTTTGCTCCTAGAGCTGCAAGCCCACCGCAAAAGTCACGGCGATCAAAAGCCATTTCAATGCGACGAGTGTGGGCGCTCTTATGCCTATAAGTACAACCTATTTACGCACATGAAGACAGTGCATTCTGACGTGAAGCCTGAGAAGAAGGTGTACAAATGCCAACTGTGCGGAAAAGAATACTCTTTCCCGCGATCCCTGCGTCTCCACTTGGACGCGCATGCTGGGACCAACGTTTTTATCTGCGACATCTGCGGGAAGTCCCTCACTAACAAAGATCACCTCAAGTTTCACCGTCGGATACACACCGGTGAGAAACCTTATATTTGTGATTTCTGTGGGAAAGGGTTCTGTAAGAGCTGCAACTTGACGTTACATAAACGTGTGCACACTGGTGAACGCCCGTATAGTTGTGAAACGTGCGGTAAAGCCTTCACACAGCGCTCAACTCTGGTTATACATCGACGTCTCCATTCTGGACAGAAACCATACACATGTTTCATTTGTGATAAAGCATTTATATGTAAGGCGTTGTTGAATGTTCATCTGAAAAATCACAGTCGTTAG
Protein Sequence: MRAVRAHHRTHKSKKPFKCDLCGTTYIYKSNLDIHLKNSHPGLKLEKKLFSCQFCDNIYATSKSLRLHVASHLGTNVFICDICGKSLTNLDHLKFHRRIHTGEKPYICDFCGKGFIKSGNLTLHRRVHTGERPYQCDTCGKAFSQRCTIIIHCRQHLGLRPYGFGSLQEVQAHRRTHGDQKPFKCDLCGSTYAYKNNLYTHLKTVHSNIKPEKKSYPCKFCAKIYANTKSRRRHMASHLGTNVYICDICGKSLTNKDHLKFHRRIHTGEKPNICDFCGKGFSKRGNLTLHRRVHTGERPYQCDTCGKGFSQRCTLVIHCRQHLGLRPYVKHEIGLKLHQDKLNHKIRLRCNICDKGFTLLLELQAHRKSHGDQKPFQCDECGRSYAYKYNLFTHMKTVHSDVKPEKKVYKCQLCGKEYSFPRSLRLHLDAHAGTNVFICDICGKSLTNKDHLKFHRRIHTGEKPYICDFCGKGFCKSCNLTLHKRVHTGERPYSCETCGKAFTQRSTLVIHRRLHSGQKPYTCFICDKAFICKALLNVHLKNHSR*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -