Tcri013091.1
Basic Information
- Insect
- Timema cristinae
- Gene Symbol
- Znf296
- Assembly
- GCA_002928295.1
- Location
- CM009477.1:49538728-49543771[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.036 5.2 9.2 5.0 1 23 63 86 63 86 0.93 2 21 0.0026 0.38 12.7 2.7 1 23 90 112 90 112 0.93 3 21 0.53 77 5.5 0.8 2 23 119 140 119 140 0.96 4 21 0.002 0.3 13.1 0.3 1 23 146 168 146 168 0.95 5 21 0.00013 0.019 16.8 4.7 1 23 174 196 174 196 0.99 6 21 0.002 0.29 13.1 1.4 1 23 207 229 207 229 0.98 7 21 0.00019 0.028 16.3 1.2 1 23 236 258 236 258 0.97 8 21 9.4e-07 0.00014 23.6 0.3 2 23 265 286 265 286 0.97 9 21 6.2e-08 9e-06 27.3 1.5 1 23 292 314 292 314 0.98 10 21 1.1e-05 0.0015 20.2 2.6 1 23 320 342 320 342 0.99 11 21 0.015 2.1 10.4 3.2 2 23 391 411 390 411 0.88 12 21 2.9e-05 0.0043 18.8 0.0 1 23 417 439 417 439 0.97 13 21 5.3e-05 0.0078 18.0 3.0 1 23 445 467 445 467 0.97 14 21 6.8e-05 0.0099 17.7 3.5 1 23 473 495 473 495 0.97 15 21 0.0001 0.015 17.1 0.5 2 23 502 523 501 523 0.95 16 21 0.00051 0.074 15.0 2.7 1 23 529 551 529 551 0.98 17 21 8e-06 0.0012 20.6 1.4 1 23 562 584 562 584 0.98 18 21 6.8e-06 0.001 20.8 0.5 2 23 591 612 590 612 0.96 19 21 3.1e-06 0.00045 21.9 0.5 2 23 619 640 619 640 0.97 20 21 1.3e-06 0.00019 23.1 2.5 1 23 646 668 646 668 0.99 21 21 0.00022 0.033 16.1 4.1 1 23 673 695 673 695 0.97
Sequence Information
- Coding Sequence
- ATGTGTACAAAAGCCTTTCTAGATGATTATACACGCCTCGGTAGAAATAATAGCATCACAAAGGAAGAGAAGCCAAAAGGGTCAGTAAAAGTGATAAATCTTGCCTCCGAATCAAACTTTGGCAAGAAGATTCCTTCAAAGCGAGTTGCCTTGGAAACTTTCAAGTCACGGAAGCAGGAAAGAACATTCTCATGCACAGGCTGCAGTAAGAAGTTTGTACGGGAACACAAATTGCGCTGCCACATGGACAATGTGCACAACAAGGTTCACAAGTGTACGGTTTGCGGGCAGACGTTTGAGAAAGCGCACCAACTGAGCTATCACAGCGTGGTGCAcaaaaaatctaaaacagaAGTATGTGACATTTGTGGTTATACCGCATATTACAGGTGTGTGATAGAGAATCATAAGAGGACACATTTCTGGGGGAATGAGTTCAGTTGCGATTTGTGCCAGAGAAGCTTTCAGGGTGCATATGCCCTTATGAAACATAAAGTGGTTCACACCGACGTGAAGCAATACCAGTGCGACTTGTGCGGCCGACTATATGTTCACAAGTGTAATCTGACCGCGCATAGAAAGACCCACGTCTCGGGATACAAACGTCCCACGGATGGTCACCAGTGTGAGGTCTGTGGGAGAAAGTTCTTGGCGAAGAACTCTCTGGTGAAGCACGTGAGATCTCATGTCGGTCAGAAACGTTGGTACAAGTGTGACGTATGTGGCAAGGACCTGTCGACGCGGGAGTCACTCCAGGTCCACTGCAGAATCCACACCGGCGAGAAGCCGGAGGTTTGCAACTACTGCGGGAAGACGTTCAGTTCCCGCGTTGGGTTGAAACTTCACGTTCGCGTTCATACCGGGGAGAAACCGTTCACTTGTAAGGAGTGCGGGAAGAGCTTCACTCAACAGTCGACTCTTATAGTCCACAAGAGACTCCATACGGGACAGCGTCCGTACGAGTGTTTGAAATGTGATAAGAGGTTCATAACCAAGACAATGATGAACAATCACATGAAGCGTCACATATGTGCAGATTTAATCCAAACAGATTCTGCAAATAAGTTGAAACGCAAGTCAACTCACAACAGTAAAGAGAAAAGAGTGAACAGTAAAGAGAAAAGAGTGAACAGTATAGAGAAAAGACTGAGGAGCGATCTTAGTTCCAACAAATGCGACTTTTGTGGTAAAGAGTTCACCCGGCATAAGATGTTGATTCACCGCAGGATCCATACCGGTGAGCGTCCGTTTGTCTGCTCATCGTGCGGGGAGGCGTTTGTGTCGAAAGGCGCTCTGACTGTTCACATGGTGATACACAGTGATGAGCGTCCCTTTTCCTGCAAGATCTGCCACCGAGCTTTCAAGCGGGCGTTTGAGTTGAAAGACCACAACAAAATACACACTGGGGAGAAGAACCACATCTGCGACATCTGCGGTTATTCGTGCATTCAGAGGACTAACCTCGTAAACCACCGCAGGAGACATTTGTTTGAGTACAAGCTGAGTTGTGACATTTGCAGCAAAGGGTTCTACACAAAGACGGAACTGCAGGAGCATAGGAACGGGCATACAGGAGAAAAACCATTTCAATGCGACACGTGTGGTGTTTCGTATCGCTATCGGTACCGGCTGACTGTCCACAAGAAGAAACACGAGGCAGGCTACATTCCTCCAGAGAAGGCGTACAAGTGTGAGATATGTAACAAGACGTACTCTCGTAAGCAGGTGTTGCTCCTGCACATGAAGTTGCACACCGGGGAAAGTCAGTGCATATGTGACATCTGCGGCAAGGCGGTTTCGAGCCGGGACTACCTTAAGATACACGTCCGGACGCACACTGGTGAGAAACCAAATGTTTGCGATGTCTGTGGTAAAGCGTTcatttcaaaaaagtatctcaaGATCCATTTCCGCACTCACACGGGTGAGCGCCCGTACACTTGTGAGTTCTGCAGTAAGAAGTTCACTCAACAGTCTTCCTTGATTGTTCACAGGAGATCTCACATAGAAAGGATTCATGTGTGTCACATATGCAAGAAGTCTTTTACCACAAAGGCATTCTTAGGGATGCACTTGAAAGAACATAACACAGTTTACTAA
- Protein Sequence
- MCTKAFLDDYTRLGRNNSITKEEKPKGSVKVINLASESNFGKKIPSKRVALETFKSRKQERTFSCTGCSKKFVREHKLRCHMDNVHNKVHKCTVCGQTFEKAHQLSYHSVVHKKSKTEVCDICGYTAYYRCVIENHKRTHFWGNEFSCDLCQRSFQGAYALMKHKVVHTDVKQYQCDLCGRLYVHKCNLTAHRKTHVSGYKRPTDGHQCEVCGRKFLAKNSLVKHVRSHVGQKRWYKCDVCGKDLSTRESLQVHCRIHTGEKPEVCNYCGKTFSSRVGLKLHVRVHTGEKPFTCKECGKSFTQQSTLIVHKRLHTGQRPYECLKCDKRFITKTMMNNHMKRHICADLIQTDSANKLKRKSTHNSKEKRVNSKEKRVNSIEKRLRSDLSSNKCDFCGKEFTRHKMLIHRRIHTGERPFVCSSCGEAFVSKGALTVHMVIHSDERPFSCKICHRAFKRAFELKDHNKIHTGEKNHICDICGYSCIQRTNLVNHRRRHLFEYKLSCDICSKGFYTKTELQEHRNGHTGEKPFQCDTCGVSYRYRYRLTVHKKKHEAGYIPPEKAYKCEICNKTYSRKQVLLLHMKLHTGESQCICDICGKAVSSRDYLKIHVRTHTGEKPNVCDVCGKAFISKKYLKIHFRTHTGERPYTCEFCSKKFTQQSSLIVHRRSHIERIHVCHICKKSFTTKAFLGMHLKEHNTVY*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -