Tcri013126.1
Basic Information
- Insect
- Timema cristinae
- Gene Symbol
- -
- Assembly
- GCA_002928295.1
- Location
- CM009477.1:49806710-49815050[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 5.3e-06 0.00077 21.2 2.2 2 23 63 84 62 84 0.97 2 23 1.3e-05 0.002 19.9 0.3 2 23 91 112 90 112 0.96 3 23 0.05 7.3 8.7 0.9 1 14 118 131 118 132 0.92 4 23 0.16 23 7.1 4.8 1 21 185 205 185 208 0.96 5 23 2.3e-05 0.0034 19.2 0.3 1 23 214 236 214 236 0.98 6 23 0.0054 0.79 11.7 5.9 1 23 242 264 242 264 0.98 7 23 0.002 0.29 13.1 0.1 2 23 271 292 270 292 0.97 8 23 6.8e-05 0.01 17.7 4.4 1 23 298 321 298 321 0.98 9 23 0.019 2.8 10.0 6.5 1 23 332 355 332 355 0.94 10 23 3.3e-05 0.0048 18.7 1.0 3 23 364 384 363 384 0.98 11 23 4e-06 0.00059 21.6 0.4 2 23 391 412 390 412 0.97 12 23 7.1e-07 0.0001 23.9 1.2 1 23 418 440 418 440 0.98 13 23 1.8 2.6e+02 3.8 0.1 1 11 446 456 446 458 0.88 14 23 0.002 0.29 13.1 0.9 2 23 509 531 509 531 0.97 15 23 3.8e-07 5.5e-05 24.8 4.0 1 23 537 559 537 559 0.98 16 23 0.0014 0.21 13.6 1.6 1 23 565 587 565 587 0.98 17 23 0.00043 0.063 15.2 0.7 1 23 593 615 593 615 0.98 18 23 0.01 1.5 10.9 1.8 1 23 621 644 621 644 0.97 19 23 0.0007 0.1 14.5 4.7 1 23 655 678 655 678 0.97 20 23 7.6e-06 0.0011 20.7 0.2 3 23 687 707 686 707 0.98 21 23 1.6e-07 2.3e-05 26.0 0.7 2 23 714 735 713 735 0.97 22 23 0.00044 0.064 15.2 3.6 1 21 741 761 741 763 0.93 23 23 1.4e-07 2.1e-05 26.1 2.4 1 23 769 791 769 791 0.99
Sequence Information
- Coding Sequence
- ATGGACTGGGACACACAGAAAATAGACCAAAGtgatatttcaaagaaaagacAGAACCAAAAGAACAAACGGGTCAAAAAATCGGAAAACAATTTGCCGCATCTTAAAAGAAGTGTGAGTAAATTTGTCAGGACAGGGTTGGACGACCACGCAATGTTTCACGGTGAGAAAGAATTGTCCACGCAGGTCTGTACCATCTGTTCTAAAAGTTTCTCAACGACGAAGTACTTGCAGCGCCACCTGCAACGCCATTTTGCTGAAAAAACGTTGCCGTGCGAGACTTGCGACCTCAAATTTAAGACTCCGTACTTGCTGCGTGTACATCAGAGACTCCACACGGGCGAGGGGATCTACAGCTGCGACCAGTGCGGGAAAACTTATGTTCACAAGTATATGGATCTCTTCCAAGTGATGCAAATGGTGAACAATTATTACACTTCAGCGACAAAAGAAGATAAAACCATACAGAAGCGATCCGTTTCCAAGAAAAACAACCTTAGTAAGACCGAATCGCGTAAAAAAGAGATAGTAGACAATGACACTGTTAACAGTTTCTCGTGCAGGGTTTGTTCGACTTTCTATCCGTCCCGGAAAAAACTCATGACTCACATGAGGTGCAAGCACAAGGTCGAGCGGCCCTACGTGTGCGCCGTTTGCCAGAAAGCGTTCAAATATTCTTTTCAACTGGAGGTACACGAGCGAATACACTCGGGGGATAAAAAGTATTCGTGCGACCTCTGCTCCTACTGTTGCGTCCAGAAGAAGAACCTAGAGATCCACAAACAGCGGCACGTCAGGGACTACAAAGTGACCTGCGACATATGCGGGAATGGTTTCTACAGTGCGAACGCCCTCGAAGAACATAAGAACAAACATTCCGGCGCACGACCTTTCGAGTGCCACGTTTGTGGCAAAGCGTATTCGTTTCAGACGAGTTACAGGTATCACATGAAGAAGTATCACCCGGACGAAGTGTTAGGGACCGTTAAGACGCACAGTTGTGGCTTCTGCGGGCAGACTTTCATCTTCAAGAAGCACCTCATTTCTCACCTACACCAGCGACACTCCGTAGAGCGAAGTACTTGGCTTTGTGATATCTGCGGTAAGTCTGTGACGGACAAATGGAGTCTCAAACATCACCGCATGATCCACACGGGGGAGCGACCGGTCGTCTGCGAAGTGTGCGGTAAAGGCTTCAAGAACAAGACGCTTCTGAAAGTCCACTTCCGCTCCCACTCGGGAGAGAAGCCGTACACGTGCGGTACCTGCGGCAAGATGTTCACGCAGCGCTCTTCTCTCAACATACACGAGCGCTATCACTCGGGCGACAGGCCGTATGCATGCATGGTCTGCGGCAAGGGCTTTGTGATGCAACTAATTCAAATGTGTAGTTCTTCGGTGATGACCAGACAAAAACGTCAACAGCTAAAAACCGGTCAAAAGATGCGCCAAAAGAAAGGTACCAATTCCTCCGCCTCTTCTTCCTCTTTCAAGACGTTAGTCGGCCACCCGACCGAGTGCGCCACCTGCAATATGTGTGGCAGCGTGCTAGAGTCAAAGAAGAAACTCACGACACACATGAAAAGCGCCCACAAAGTCGACAGGCCGCACACGTGCGACACATGCCAGAAGTCTTTCAAGACGTCGGAGAATCTGAAAAGGCACATAAAAATCCACTTGGGGGAAAAGAATTACTCGTGCGACATATGCGACTATTCTTCTAATCAAAAAGCGCACGTAGAGAACCACAAACTGAGACATtcccaaaatttcaaatatacttGCGAGACTTGCGGTCGAGGGTTTTATTCGCAGAGTATACTGAAAGAGcataaaaacatacattctGGAGCGCGCCCATACATTTGTTCTGTCTGTAATAAAGAGTATTCATTCCGGAATAGTTTGGCGTTCCATATGAAAAAGCGCCACCCGGAAGCTATGGTGGGGCACGTCAACAATCATAAATGTCACTTTTGCGAACgctcatttatttataagacgTTGTTATCCGTTCATATCCAACGCGAGCATACAAATATAAGGAAGACCGCTCTGTGCGAGATCTGCGGCAAGTCGTTTGCCGACAGATACACCCTGAGGGACCACCGGATAATCCACACGGGGGAGAAGCCGCTCGTCTGCAACATTTGCGGCAAAGCGTTCAAGGTCAGGGCCCATTTGAACTCTCACATCCGTACGCACACGGGGGAGAAACCTCACATGTGTGGCACATGCGGCAAGACGTTCACGGTGCGCTCGTCGCTCAAGATTCACGAGCGCTGTCACACGGGCCAGAAACCTTTCCAGTGCACTATCTGTGACAAGAGGTTTGCGCAGAGTTCCACGTTGAAAACCCACCAGAAGTCTCATGGTTCGATGGCGCAGAGCAACTTACCCATTGATCCCAACAGCTCATACATCATTCACTTATGA
- Protein Sequence
- MDWDTQKIDQSDISKKRQNQKNKRVKKSENNLPHLKRSVSKFVRTGLDDHAMFHGEKELSTQVCTICSKSFSTTKYLQRHLQRHFAEKTLPCETCDLKFKTPYLLRVHQRLHTGEGIYSCDQCGKTYVHKYMDLFQVMQMVNNYYTSATKEDKTIQKRSVSKKNNLSKTESRKKEIVDNDTVNSFSCRVCSTFYPSRKKLMTHMRCKHKVERPYVCAVCQKAFKYSFQLEVHERIHSGDKKYSCDLCSYCCVQKKNLEIHKQRHVRDYKVTCDICGNGFYSANALEEHKNKHSGARPFECHVCGKAYSFQTSYRYHMKKYHPDEVLGTVKTHSCGFCGQTFIFKKHLISHLHQRHSVERSTWLCDICGKSVTDKWSLKHHRMIHTGERPVVCEVCGKGFKNKTLLKVHFRSHSGEKPYTCGTCGKMFTQRSSLNIHERYHSGDRPYACMVCGKGFVMQLIQMCSSSVMTRQKRQQLKTGQKMRQKKGTNSSASSSSFKTLVGHPTECATCNMCGSVLESKKKLTTHMKSAHKVDRPHTCDTCQKSFKTSENLKRHIKIHLGEKNYSCDICDYSSNQKAHVENHKLRHSQNFKYTCETCGRGFYSQSILKEHKNIHSGARPYICSVCNKEYSFRNSLAFHMKKRHPEAMVGHVNNHKCHFCERSFIYKTLLSVHIQREHTNIRKTALCEICGKSFADRYTLRDHRIIHTGEKPLVCNICGKAFKVRAHLNSHIRTHTGEKPHMCGTCGKTFTVRSSLKIHERCHTGQKPFQCTICDKRFAQSSTLKTHQKSHGSMAQSNLPIDPNSSYIIHL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -